SecReT6
I. Summary
SecReT6 ID311 insolico
StrainAcinetobacter baumannii AB0057
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011586
Location1559693..1579099
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AB57_14741555574..1556455 [-], 882213156430nitrate transport ATP-binding protein NrtC 
2AB57_14751556455..1557399 [-], 945213156431binding-protein-dependent transport system inner membrane protein 
3AB57_14761557357..1557473 [-], 117213156432hypothetical protein 
4AB57_14771557495..1557896 [-], 402213156433hypothetical protein 
5AB57_14781559023..1559676 [+], 654213156434hypothetical protein 
6AB57_14791559693..1560196 [+], 504213156435type VI secretion protein, family  TssB
7AB57_14801560189..1561670 [+], 1482213156436type VI secretion protein, EvpB/family  TssC
8AB57_14811561719..1562222 [+], 504213156437type VI secretion system effector  TssD
9AB57_14821562302..1562778 [+], 477213156438type VI secretion system lysozyme-like protein  TssE
10AB57_1483 (vasA)1562795..1564606 [+], 1812213156439type VI secretion protein, family  TssF
11AB57_14841564570..1565568 [+], 999213156440type VI secretion protein, family  TssG
12AB57_14851565565..1566974 [+], 1410213156441hypothetical protein 
13AB57_1486 (icmF)1567005..1570829 [+], 3825213156442type VI secretion protein IcmF  TssM
14AB57_14871570867..1571826 [+], 960213156443type VI secretion-associated protein, family 
15AB57_14881571829..1572596 [+], 768213156444OmpA/MotB domain-containing protein  TagL
16AB57_14891572613..1572876 [+], 264213156445hypothetical protein  PAAR
17AB57_1490 (clpV)1573095..1575776 [+], 2682213156446type VI secretion ATPase, ClpV1 family  TssH
18AB57_14911575800..1576894 [+], 1095213156447type VI secretion-associated protein, ImpA family  TssA
19AB57_14921576911..1578275 [+], 1365213156448type VI secretion protein, family  TssK
20AB57_14931578293..1579099 [+], 807213156449DotU family type IV / VI secretion system protein  TssL
21AB57_14941579112..1579714 [+], 603213156450hypothetical protein 
22AB57_14951579722..1580675 [+], 954213156451D-alanyl-D-alanine carboxypeptidase 
23AB57_14961580678..1581529 [-], 852213156452regulatory protein LysR:LysR, substrate-binding 
24AB57_14971581681..1582349 [+], 669213156453ankyrin 
25AB57_14981582365..1582847 [+], 483213156454guanine deaminase 
26AB57_14991582847..1584025 [+], 1179213156455cyanate transport protein CynX 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1AB57_14811561719..1562222 [+], 504213156437type VI secretion system effector A1S_1296

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Proteins        Genes
N/A
N/A