SecReT6
I. Summary
SecReT6 ID313 insolico
StrainMethylocella silvestris BL2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011666
Location2556793..2579234
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Msil_23482553024..2553584 [+], 561217978493hypothetical protein 
2Msil_23492553589..2555439 [-], 1851217978494serine/threonine protein kinase 
3Msil_23502555579..2556028 [-], 450217978495FKBP-type peptidylprolyl isomerase 
4Msil_23512556087..2556788 [-], 702217978496type VI secretion-associated protein 
5Msil_23522556793..2560338 [-], 3546217978497type VI secretion protein IcmF  TssM
6Msil_23532560345..2561829 [-], 1485217978498DotU family type IV / VI secretion system protein  TssL
7Msil_23542561846..2563186 [-], 1341217978499type VI secretion protein  TssK
8Msil_23552563246..2564607 [-], 1362217978500FHA domain-containing protein  Fha
9Msil_23562564643..2565185 [-], 543217978501hypothetical protein 
10Msil_23572565212..2567071 [-], 1860217978502ImpA family type VI secretion-associated protein  TssI
11Msil_23582567293..2568618 [+], 1326217978503hypothetical protein  TssA
12Msil_23592568630..2569565 [-], 936217978504hypothetical protein 
13Msil_23602570154..2570705 [+], 552217978505type VI secretion protein  TssB
14Msil_23612570723..2572237 [+], 1515217978506type VI secretion protein EvpB  TssC
15Msil_23622572355..2572840 [+], 486217978507type VI secretion system effector  TssD
16Msil_23632572969..2573517 [+], 549217978508type VI secretion system lysozyme-like protein  TssE
17Msil_23642573523..2575481 [+], 1959217978509type VI secretion protein  TssF
18Msil_23652575478..2576527 [+], 1050217978510type VI secretion protein  TssG
19Msil_23662576520..2579234 [+], 2715217978511type VI secretion ATPase, ClpV1 family  TssH
20Msil_23672579367..2580191 [+], 825217978512hypothetical protein 
21Msil_23682580213..2580776 [-], 564217978513hypothetical protein 
22Msil_23692580901..2581659 [-], 759217978514type 12 methyltransferase 
23Msil_23702581758..2582384 [-], 627217978515putative exported protease/peptidase 
24Msil_23712582419..2584104 [-], 1686217978516peptidase C14 caspase catalytic subunit p20 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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