SecReT6
I. Summary
SecReT6 ID317 insolico
StrainEscherichia coli S88
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011742
Location3034518..3064283
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECS88_3079 (csdA)3029719..3030924 [+], 1206218559798cysteine sulfinate desulfinase 
2ECS88_3080 (ygdK)3030924..3031367 [+], 444218559799Fe-S metabolism protein (sufE-like) 
3ECS88_3081 (ygdL)3031418..3032224 [-], 807218559800hypothetical protein 
4ECS88_3082 (mltA)3032301..3033398 [-], 1098218559801murein transglycosylase A 
5ECS88_30833034518..3035039 [+], 522218559802hypothetical protein  TssB
6ECS88_30843035092..3036636 [+], 1545218559803hypothetical protein  TssC
7ECS88_30853036654..3037991 [+], 1338218559804hypothetical protein  TssK
8ECS88_30863037988..3038653 [+], 666218559805hypothetical protein  TssL
9ECS88_30873038666..3040318 [+], 1653218559806hypothetical protein  TagL
10ECS88_30883040376..3040867 [+], 492218559807hypothetical protein  TssD
11ECS88_30893041059..3043704 [+], 2646218559808ATPases with chaperone activity, ATP-binding subunit  TssH
12ECS88_30903043716..3046196 [+], 2481218559809hypothetical protein  TssI
13ECS88_30913046168..3047382 [+], 1215218559810hypothetical protein  Tle4 (e)
14ECS88_30923047361..3047975 [+], 615218559811hypothetical protein 
15ECS88_30933047950..3048783 [+], 834218559812hypothetical protein  Tli4 (i)
16ECS88_30943048752..3049045 [+], 294218559813hypothetical protein 
17ECS88_30963049660..3050907 [+], 1248218559814hypothetical protein 
18ECS88_30973050917..3054270 [+], 3354218559815hypothetical protein  TssM
19ECS88_30983054236..3055873 [+], 1638218559816hypothetical protein  TssA
20ECS88_30993055873..3057456 [+], 1584218559817hypothetical protein  PAAR
21ECS88_31003057444..3058085 [+], 642218559818hypothetical protein 
22ECS88_31023059155..3060915 [+], 1761218559819hypothetical protein  TssF
23ECS88_31033060870..3061958 [+], 1089218559820hypothetical protein  TssG
24ECS88_31043061939..3062475 [+], 537218559821hypothetical protein  TssJ
25ECS88_31053062479..3062907 [+], 429218559822hypothetical protein  TssE
26ECS88_31063062907..3064283 [+], 1377218559823hypothetical protein  TssA
27ECS88_31073064585..3065541 [-], 9572185598242-hydroxyacid dehydrogenase 
28ECS88_31083065604..3066200 [-], 597218559825phosphosugar isomerase 
29ECS88_31093066203..3067378 [-], 1176218559826aminotransferase 
30ECS88_31103067378..3068958 [-], 1581218559827Phosphotransferase system system, maltose and glucose-specific IIABC component 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529 , AHW84487

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECS88_30883040376..3040867 [+], 492218559807hypothetical protein EC042_4529
2ECS88_30913046168..3047382 [+], 1215218559810hypothetical protein AHW84487

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Proteins        Genes

Homology Immunity protein list
AHW84488

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECS88_30933047950..3048783 [+], 834218559812hypothetical protein AHW84488

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Proteins        Genes
N/A