SecReT6
I. Summary
SecReT6 ID32 insolico
StrainYersinia pestis KIM10+
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_004088
Location2952460..2996296
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121121
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1y26712947755..2948423 [+], 66922126550ABC transporter ATP-binding protein 
2y26722948433..2949743 [+], 131122126551arylsulfatase 
3y2673 (moeA)2950278..2951552 [+], 127522126552molybdopterin biosynthesis protein MoeA 
4y2674 (moeB)2951524..2952324 [+], 80122126553molybdopterin biosynthesis protein MoeB 
5y26752952460..2953668 [+], 120922126554transposase 
6y26762953712..2954365 [-], 65422126555hypothetical protein 
7y26772954593..2956356 [-], 176422126556ABC transporter ATP-binding protein 
8y26782956871..2957494 [+], 62422126557hypothetical protein 
9y26792957706..2959073 [-], 136822126558hypothetical protein  TssA
10y26802959098..2959367 [-], 27022126559hypothetical protein  TssE
11y26812959360..2959551 [-], 19222126560hypothetical protein  TssE
12y26822959551..2960132 [-], 58222126561hypothetical protein  TssJ
13y26832960107..2961192 [-], 108622126562hypothetical protein  TssG
14y26842961156..2962919 [-], 176422126563hypothetical protein  TssF
15y26852963140..2963610 [-], 47122126564hypothetical protein 
16y26862963610..2964668 [-], 105922126565hypothetical protein  PAAR
17y26872964686..2966287 [-], 160222126566hypothetical protein  TssA
18y26882966331..2969753 [-], 342322126567hypothetical protein  TssM
19y26892969750..2970982 [-], 123322126568hypothetical protein 
20y26902972094..2972414 [+], 32122126569transposase 
21y26912972545..2972682 [+], 13822126570transposase 
22y26922973147..2973617 [-], 47122126571hypothetical protein 
23y26942973790..2975952 [-], 216322126572hypothetical protein 
24y26932973921..2974181 [-], 26122126573hypothetical protein 
25y26952975989..2976249 [-], 26122126574hypothetical protein 
26y26962976403..2977176 [-], 77422126575hypothetical protein 
27y26972977173..2979473 [-], 230122126576hypothetical protein 
28y26982979489..2981837 [-], 234922126577hypothetical protein  TssI
29y2699 (clpB)2981840..2984479 [-], 264022126578heat shock protein  TssH
30y27002984867..2985358 [-], 49222126579hypothetical protein  TssD
31y27012984900..2985385 [+], 48622126580hypothetical protein 
32y27022985362..2987098 [-], 173722126581hypothetical protein  TagL
33y27032987098..2987784 [-], 68722126582hypothetical protein  TssL
34y27042987781..2989133 [-], 135322126583hypothetical protein  TssK
35y27052989145..2990689 [-], 154522126584hypothetical protein  TssC
36y27062990732..2991235 [-], 50422126585hypothetical protein  TssB
37y27072992221..2993069 [-], 84922126586acyl transferase 
38y27082993454..2993942 [-], 48922126587hypothetical protein 
39y27092993981..2994769 [-], 789221265883-oxoacyl-ACP reductase 
40y27102994772..2995548 [-], 77722126589polyketide biosynthesis enoyl-CoA hydratase 
41y27112995526..2996296 [-], 77122126590enoyl-CoA hydratase 
42y2712 (pksG)2996238..2997476 [-], 123922126591hydroxymethylglutaryl-coenzyme A synthase 
43y2713 (fabG)2997492..2998283 [-], 792221265923-ketoacyl-ACP reductase 
44y2714 (fabF)2998231..2999514 [-], 1284221265933-ketoacyl-ACP synthase 
45y2715 (fabZ)2999504..3000028 [-], 52522126594myristoyl-acyl carrier dehydratase 
46y27163000292..3000612 [-], 32122126595hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1y27002984867..2985358 [-], 49222126579hypothetical protein EC042_4529

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation