SecReT6
I. Summary
SecReT6 ID323 insolico
StrainVibrio splendidus LGP32
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_011753
Location1419523..1445691
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VS_13161417460..1418503 [-], 1044218709307two-component regulatory system response regulator 
2VS_13171418722..1419408 [-], 687218709308hypothetical protein 
3VS_13181419523..1422915 [-], 3393218709309hypothetical protein  TssM
4VS_13191422918..1424120 [-], 1203218709310hypothetical protein  TssL
5VS_13201424120..1425493 [-], 1374218709311hypothetical protein  TssK
6VS_13211425502..1425981 [-], 480218709312hypothetical protein  TssJ
7VS_13221425978..1426928 [-], 951218709313hypothetical protein  Fha
8VS_13231426932..1427660 [-], 729218709314hypothetical protein 
9VS_13241427647..1428645 [-], 999218709315hypothetical protein 
10VS_13251428642..1431266 [-], 2625218709316hypothetical protein 
11VS_13261431277..1433889 [-], 2613218709317protein disaggregation chaperone  TssH
12VS_13271433936..1434868 [-], 933218709318hypothetical protein  TssG
13VS_13281434915..1436666 [-], 1752218709319hypothetical protein  TssF
14VS_13291436659..1437081 [-], 423218709320hypothetical protein  TssE
15VS_13301437078..1438532 [-], 1455218709321hypothetical protein  TssC
16VS_13311438513..1439991 [-], 1479218709322hypothetical protein  TssC
17VS_13321439991..1440494 [-], 504218709323hypothetical protein  TssB
18VS_13331440514..1441035 [-], 522218709324hypothetical protein  TssD
19VS_13341441070..1442566 [-], 1497218709325hypothetical protein  TssA
20VS_13351442749..1443048 [-], 300218709326hypothetical protein  PAAR
21VS_13361443073..1443633 [-], 561218709327hypothetical protein 
22VS_13371443693..1445192 [-], 1500218709328hypothetical protein  TssI
23VS_13381445092..1445691 [-], 600218709329hypothetical protein  TssI
24VS_13391445835..1446044 [+], 210218709330hypothetical protein 
25VS_13401446192..1447487 [+], 1296218709331hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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