SecReT6
I. Summary
SecReT6 ID324 insolico
StrainPseudomonas aeruginosa LESB58
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011770
Location90608..116605
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PLES_00751 (ppkA)86087..89185 [-], 3099218888819serine/threonine protein kinase PpkA  PpkA
2PLES_0076189193..89921 [-], 729218888820putative phosphoprotein phosphatase  PppA
3PLES_0077189931..90611 [-], 681218888821hypothetical protein  TagF
4PLES_0078190608..93913 [-], 3306218888822hypothetical protein  TssM
5PLES_0079194135..95484 [-], 1350218888823hypothetical protein  TssL
6PLES_0080195491..96825 [-], 1335218888824hypothetical protein  TssK
7PLES_0081196841..97305 [-], 465218888825putative lipoprotein  TssJ
8PLES_0082197350..98837 [-], 1488218888826hypothetical protein  Fha
9PLES_0083199205..100239 [+], 1035218888827hypothetical protein  TssA
10PLES_00841100328..100846 [+], 519218888828hypothetical protein  TssB
11PLES_00851100859..102355 [+], 1497218888829hypothetical protein  TssC
12PLES_00861102431..102919 [+], 489218888830hypothetical protein  TssD
13PLES_00871103087..103932 [+], 846218888831putative secretion protein  TagJ
14PLES_00881103934..104443 [+], 510218888832hypothetical protein  TssE
15PLES_00891104440..106299 [+], 1860218888833hypothetical protein  TssF
16PLES_00901106263..107309 [+], 1047218888834hypothetical protein  TssG
17PLES_00911107302..110010 [+], 2709218888835putative ClpA/B-type chaperone  TssH
18PLES_00921110057..111988 [+], 1932218888836hypothetical protein  TssI
19PLES_00931112103..112387 [-], 285218888837hypothetical protein  Tsi6 (i)
20PLES_00941112384..113676 [-], 1293218888838hypothetical protein  Tse6 (e)
21PLES_00951113692..114126 [-], 435218888839hypothetical protein 
22PLES_00961114380..116605 [+], 2226218888840hypothetical protein  TssI
23PLES_00971116633..117082 [+], 450218888841hypothetical protein 
24PLES_00981117012..118211 [+], 1200218888842hypothetical protein 
25PLES_00991118208..119245 [+], 10382188888433-oxoacyl-(acyl carrier protein) synthase 
26PLES_01001119246..120193 [+], 948218888844hypothetical protein 
27PLES_01011120204..121118 [+], 915218888845hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091, PA0093, PA0095, PA3484, PA2774, PA2702, PA2685, PA2684, PA1844

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PLES_00861102431..102919 [+], 489218888830hypothetical protein PA0085
2PLES_00921110057..111988 [+], 1932218888836hypothetical protein PA0091
3PLES_00941112384..113676 [-], 1293218888838hypothetical protein PA0093
4PLES_00961114380..116605 [+], 2226218888840hypothetical protein PA0095
5PLES_152811658764..1659990 [-], 1227218890268hypothetical protein PA3484
6PLES_230012470835..2471422 [+], 588218891037hypothetical protein PA2774
7PLES_240212579507..2579983 [-], 477218891137hypothetical protein PA2702
8PLES_241912598904..2601084 [+], 2181218891154hypothetical protein PA2685
9PLES_242012601134..2605087 [+], 3954218891155hypothetical protein PA2684
10PLES_348113863751..3864215 [+], 465218892200hypothetical protein PA1844

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Proteins        Genes

Homology Immunity protein list
PA0092, PA3485, PA2775, PA2703, PA1845

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PLES_00931112103..112387 [-], 285218888837hypothetical protein PA0092
2PLES_152711658324..1658767 [-], 444218890267hypothetical protein PA3485
3PLES_229912470393..2470830 [+], 438218891036hypothetical protein PA2775
4PLES_240112579264..2579497 [-], 234218891136hypothetical protein PA2703
5PLES_348013863191..3863709 [+], 519218892199hypothetical protein PA1845

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Proteins        Genes
N/A