SecReT6
I. Summary
SecReT6 ID327 insolico
StrainMethylobacterium nodulans ORS 2060
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011894
Location3121470..3146421
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Mnod_30273117920..3118225 [+], 306220922970hypothetical protein 
2Mnod_30283118538..3118897 [+], 360220922971hypothetical protein 
3Mnod_30293119460..3121418 [+], 1959220922972PAS/PAC sensor hybrid histidine kinase 
4Mnod_30303121470..3122306 [-], 837220922973peptidoglycan-binding domain 1 protein 
5Mnod_30313122524..3123006 [-], 483220922974type VI secretion system effector  TssD
6Mnod_30333123747..3124454 [-], 708220922975winged helix family two component transcriptional regulator 
7Mnod_30343124544..3125260 [+], 717220922976winged helix family two component transcriptional regulator 
8Mnod_30353125273..3125947 [-], 675220922977Crp/Fnr family transcriptional regulator 
9Mnod_30363126081..3128792 [-], 2712220922978type VI secretion ATPase, ClpV1 family  TssH
10Mnod_30373128789..3129946 [-], 1158220922979type VI secretion protein  TssG
11Mnod_30383129943..3131886 [-], 1944220922980type VI secretion protein  TssF
12Mnod_30393131883..3132434 [-], 552220922981type VI secretion system lysozyme-like protein  TssE
13Mnod_30403132492..3134012 [-], 1521220922982EvpB family type VI secretion protein  TssC
14Mnod_30413134036..3134572 [-], 537220922983type VI secretion protein  TssB
15Mnod_30423134708..3136003 [-], 1296220922984hypothetical protein  TssA
16Mnod_30433136157..3137992 [+], 1836220922985ImpA family type VI secretion-associated protein  TssI
17Mnod_30443138002..3138553 [+], 552220922986hypothetical protein 
18Mnod_30453138566..3139867 [+], 1302220922987FHA domain-containing protein  Fha
19Mnod_30463139985..3141322 [+], 1338220922988type VI secretion protein  TssK
20Mnod_30473141319..3142788 [+], 1470220922989DotU family type IV / VI secretion system protein  TssL
21Mnod_30483142807..3146421 [+], 3615220922990type VI secretion protein IcmF  TssM
22Mnod_30493146438..3147106 [+], 669220922991type VI secretion-associated protein 
23Mnod_30503147100..3147903 [+], 804220922992protein serine/threonine phosphatase 
24Mnod_30513148309..3149616 [+], 1308220922993hypothetical protein 
25Mnod_30523149626..3149745 [+], 120220922994hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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