SecReT6
I. Summary
SecReT6 ID328 insolico
StrainRhodobacter sphaeroides KD131
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_011958
Location558629..583934
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RSKD131_3633553652..554674 [+], 1023221369470hypothetical protein 
2RSKD131_3634554667..555758 [+], 10922213694713-oxoacyl-(acyl carrier protein) synthase 
3RSKD131_3635555755..556756 [+], 1002221369472hypothetical protein 
4RSKD131_3636556753..557532 [+], 780221369473hypothetical protein 
5RSKD131_3637557555..558241 [+], 687221369474hypothetical protein 
6RSKD131_3638558238..558636 [-], 399221369475hypothetical protein 
7RSKD131_3639558629..561298 [-], 2670221369476ATPase AAA-2 domain protein precursor  TssH
8RSKD131_3640561412..563418 [+], 2007221369477Serine/threonine protein kinase 
9RSKD131_3641563494..564588 [+], 1095221369478ImpA domain protein  TssA
10RSKD131_3642564607..565137 [+], 531221369479hypothetical protein  TssB
11RSKD131_3643565134..566651 [+], 1518221369480hypothetical protein  TssC
12RSKD131_3644566703..567194 [+], 492221369481hypothetical protein  TssD
13RSKD131_3645567227..567934 [+], 708221369482hypothetical protein  TssE
14RSKD131_3646567931..569799 [+], 1869221369483hypothetical protein  TssF
15RSKD131_3647569898..570761 [+], 864221369484hypothetical protein  TssG
16RSKD131_3648570755..571984 [+], 1230221369485FHA domain containing protein precursor  Fha
17RSKD131_3649571992..572429 [+], 438221369486hypothetical protein  TssJ
18RSKD131_3650572438..573766 [+], 1329221369487hypothetical protein  TssK
19RSKD131_3651573831..575192 [+], 1362221369488OmpA/MotB domain protein precursor  TssL
20RSKD131_3652575193..578714 [+], 3522221369489ImcF domain protein precursor  TssM
21RSKD131_3653578704..579195 [+], 492221369490hypothetical protein 
22RSKD131_3654579206..581509 [-], 2304221369491Rhs element Vgr protein  TssI
23RSKD131_3655581526..583934 [-], 2409221369492hypothetical protein  TssM
24RSKD131_3656583934..584782 [-], 849221369493hypothetical protein 
25RSKD131_3657584786..585532 [-], 747221369494Protein phosphatase 2C domain protein 
26RSKD131_3658585675..586439 [+], 765221369495OmpA/MotB domain protein precursor  TagL
27RSKD131_3659586436..587362 [-], 927221369496hypothetical protein 
28RSKD131_3660587359..587769 [-], 411221369497hypothetical protein 
29RSKD131_3661587769..588842 [-], 1074221369498Zinc carboxypeptidase A metalloprotease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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