SecReT6
I. Summary
SecReT6 ID331 insolico
StrainErwinia pyrifoliae Ep1/96
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012214
Location712803..749026
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EpC_06090707856..708089 [+], 234259907285hypothetical protein 
2EpC_06100 (rsmC)708577..709605 [-], 102925990728616S ribosomal RNA m2G1207 methyltransferase 
3EpC_06110 (holD)709778..710197 [+], 420259907287DNA polymerase III subunit psi 
4EpC_06120 (rimI)710160..710600 [+], 441259907288ribosomal-protein-alanine N-acetyltransferase 
5EpC_06130 (yjjG)710615..711295 [+], 681259907289nucleotidase 
6EpC_06140712278..712778 [+], 501259907290hypothetical protein 
7EpC_06150712803..713315 [+], 513259907291type VI secretion system, lipoprotein VCA0113  TssJ
8EpC_06160713335..714678 [+], 1344259907292hypothetical protein  TssK
9EpC_06170 (vasF)714696..715937 [+], 1242259907293hypothetical protein  TssL
10EpC_06180715941..719573 [+], 3633259907294type VI secretion system, IcmF protein  TssM
11EpC_06190719590..720300 [+], 711259907295type VI secretion system-associated protein 
12EpC_06200720318..721325 [+], 1008259907296type VI secretion system-associated, ImpA protein  TssA
13EpC_06210721388..721924 [+], 537259907297hypothetical protein  TssB
14EpC_06220721928..723427 [+], 1500259907298hypothetical protein  TssC
15EpC_06230723424..723699 [+], 276259907299hypothetical protein 
16EpC_06240 (Hcp)723971..724453 [+], 483259907300secretion apparatus virulence factor  TssD
17EpC_06250724508..724951 [+], 444259907301hypothetical protein 
18EpC_06260724976..725713 [+], 738259907302hypothetical protein 
19EpC_06270726345..727127 [+], 783259907303hypothetical protein 
20EpC_06280728203..728604 [+], 402259907304hypothetical protein 
21EpC_06290728955..730775 [+], 1821259907305type VI secretion system, FHA domain-containing protein  Fha
22EpC_06300730772..731566 [+], 795259907306Protein phosphatase 2C-like 
23EpC_06310731584..732552 [+], 969259907307hypothetical protein 
24EpC_06320732562..733383 [+], 822259907308hypothetical protein  TagJ
25EpC_06330733380..733946 [+], 567259907309hypothetical protein  TssE
26EpC_06340 (vasA)733965..735839 [+], 1875259907310type VI secretion system family protein, VCA0110  TssF
27EpC_06350735836..736894 [+], 1059259907311hypothetical protein  TssG
28EpC_06360736936..737682 [+], 747259907312hypothetical protein 
29EpC_06370737695..738015 [+], 321259907313hypothetical protein 
30EpC_06380738110..740725 [+], 2616259907314type VI secretion system family ATPase, ClpV1  TssH
31EpC_06390740755..742176 [+], 1422259907315Serine/threonine protein kinase 
32EpC_06400 (vgrG1)742223..744184 [+], 1962259907316Rhs element Vgr protein  TssI
33EpC_06410744207..745274 [+], 1068259907317hypothetical protein  PAAR
34EpC_06420745302..745736 [+], 435259907318hypothetical protein 
35EpC_06430745760..746836 [+], 1077259907319hypothetical protein 
36EpC_06440 (vgrG2)747098..749026 [+], 1929259907320Rhs element Vgr protein  TssI
37EpC_06450749106..749612 [+], 507259907321hypothetical protein 
38EpC_06460749619..750332 [+], 714259907322hypothetical protein 
39EpC_06470750461..750853 [+], 393259907323hypothetical protein 
40EpC_06480750991..751791 [+], 801259907324hypothetical protein 
41EpC_06490751853..752086 [+], 234259907325hypothetical protein 
42EpC_06500752247..753287 [-], 1041259907326transposase 
43EpC_06510753473..753874 [+], 402259907327hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EpC_06240(Hcp)723971..724453 [+], 483259907300secretion apparatus virulence factor SMA2263

Download FASTA format files
Proteins        Genes
N/A
(1) Thapa SP et al. (2013). Comparative genomics of Japanese Erwinia pyrifoliae strain Ejp617 with closely related erwinias. Genome. 56(2):83-90. [PudMed:23517317] in_silico
 
in_silico This literature contains bioinformatics investigation