SecReT6
I. Summary
SecReT6 ID332 insolico
StrainGemmatimonas aurantiaca T-27
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012489
Location4553482..4576958
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1021
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1GAU_38634550695..4551516 [-], 822226229269hypothetical protein 
2GAU_38644551562..4553421 [+], 1860226229270putative serine/threonine protein kinase 
3GAU_38654553482..4557009 [-], 3528226229271hypothetical membrane protein  TssM
4GAU_38664557043..4557771 [-], 729226229272hypothetical protein  TssL
5GAU_38674557848..4559227 [-], 1380226229273hypothetical protein  TssK
6GAU_38684559383..4561317 [+], 1935226229274hypothetical protein 
7GAU_38694561442..4562788 [-], 1347226229275hypothetical protein  TssK
8GAU_38704563095..4563601 [+], 507226229276hypothetical protein  TssB
9GAU_38714563604..4565082 [+], 1479226229277hypothetical protein  TssC
10GAU_38724565149..4565640 [+], 492226229278hypothetical protein  TssD
11GAU_38734565655..4566356 [+], 702226229279hypothetical protein  TagJ
12GAU_38744566433..4568313 [+], 1881226229280hypothetical protein  TssA
13GAU_38754568340..4568831 [+], 492226229281hypothetical protein  TssE
14GAU_38764568906..4570759 [+], 1854226229282hypothetical protein  TssF
15GAU_38774570756..4571892 [+], 1137226229283hypothetical protein  TssG
16GAU_3878 (clpB)4571986..4574649 [+], 2664226229284putative chaperone ClpB  TssH
17GAU_38794574754..4576958 [+], 2205226229285hypothetical protein  TssI
18GAU_38804576966..4577661 [+], 696226229286hypothetical protein 
19GAU_38814577665..4577964 [+], 300226229287hypothetical protein  PAAR
20GAU_38824578028..4578411 [-], 3842262292886-pyruvoyl tetrahydropterin synthase family protein 
21GAU_38834578486..4580306 [+], 1821226229289hypothetical protein 
22GAU_38844580291..4581226 [+], 936226229290hypothetical protein 
23GAU_38854581211..4581654 [-], 444226229291hypothetical membrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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