SecReT6
I. Summary
SecReT6 ID333 insolico
StrainAzotobacter vinelandii DJ
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012560
Location2722432..2743742
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Avin_265602717511..2718143 [-], 633226944734hypothetical protein 
2Avin_265702718194..2719225 [-], 1032226944735Pentapeptide repeat-containing protein 
3Avin_265802719249..2721867 [-], 2619226944736Pentapeptide repeat-containing protein 
4Avin_265902721869..2722219 [-], 351226944737hypothetical protein 
5Avin_266002722432..2724495 [-], 2064226944738Rhs element Vgr protein  TssI
6Avin_266102724500..2727160 [-], 2661226944739ClpA/B-type protease  TssH
7Avin_266202727153..2728166 [-], 1014226944740hypothetical protein  TssG
8Avin_266302728190..2730052 [-], 1863226944741hypothetical protein  TssF
9Avin_266402730052..2730594 [-], 543226944742hypothetical protein  TssE
10Avin_266502730697..2731179 [-], 483226944743hypothetical protein  TssD
11Avin_266602731238..2732740 [-], 1503226944744hypothetical protein  TssC
12Avin_266702732754..2733320 [-], 567226944745hypothetical protein  TssB
13Avin_266802733396..2734430 [-], 1035226944746ImpA domain-containing protein  TssA
14Avin_266902734439..2736217 [-], 1779226944747Protein kinase 
15Avin_267002736217..2736915 [-], 699226944748hypothetical protein 
16Avin_267102736912..2740529 [-], 3618226944749hypothetical protein  TssM
17Avin_267202740526..2741818 [-], 1293226944750hypothetical protein  TssL
18Avin_267302741800..2743167 [-], 1368226944751hypothetical protein  TssK
19Avin_267402743164..2743742 [-], 579226944752hypothetical protein  TssJ
20Avin_267602744129..2744449 [+], 321226944753hypothetical protein 
21Avin_267702744487..2746184 [+], 1698226944754hypothetical protein  Fha
22Avin_267802746166..2746936 [+], 771226944755protein phosphatase 2C-like protein 
23Avin_267902747055..2747411 [+], 357226944756hypothetical protein 
24Avin_268002747419..2747910 [+], 492226944757hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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