SecReT6
SecReT6
I. Summary
SecReT6 ID334 insolico
StrainAzotobacter vinelandii DJ
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012560
Location5141501..5160424
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Avin_50690 (modG)5137140..5137568 [+], 429226947059Mo processing, homeostasis 
2Avin_507005137651..5138601 [+], 951226947060ABC transporter ATP-binding protein 
3Avin_507105138555..5139448 [-], 894226947061ABC type tungstate transporter, permease 
4Avin_507205139591..5140286 [-], 696226947062ABC transporter permease 
5Avin_50730 (modA3)5140283..5141059 [-], 777226947063molybdate ABC transporter substrate-binding protein 
6Avin_507505141501..5142592 [-], 1092226947064ImpA-like protein  TssA
7Avin_507605142608..5146426 [-], 3819226947065hypothetical protein  TssM
8Avin_507705146423..5147187 [-], 765226947066hypothetical protein  TssL
9Avin_507805147205..5148530 [-], 1326226947067hypothetical protein  TssK
10Avin_507905148576..5149073 [-], 498226947068hypothetical protein 
11Avin_508005149261..5149824 [+], 564226947069hypothetical protein  TssB
12Avin_508105149857..5151338 [+], 1482226947070hypothetical protein  TssC
13Avin_508205151416..5151913 [+], 498226947071hypothetical protein  TssD
14Avin_508305151929..5152381 [+], 453226947072hypothetical protein  TssE
15Avin_508405152365..5154158 [+], 1794226947073hypothetical protein  TssF
16Avin_508505154122..5155144 [+], 1023226947074hypothetical protein  TssG
17Avin_508605155147..5157675 [+], 2529226947075AAA ATPase  TssH
18Avin_508705158418..5160424 [+], 2007226947076Rhs element Vgr protein  TssI
19Avin_508805160435..5160980 [+], 546226947077hypothetical protein 
20Avin_508905160977..5161309 [-], 333226947078hypothetical protein 
21Avin_509005161556..5161951 [-], 396226947079nitrogen fixation-like protein 
22Avin_50910 (nafY)5161948..5162679 [-], 732226947080nitrogen fixation-like protein subunit gamma 
23Avin_50920 (rnfH)5162704..5162964 [-], 261226947081RnfABCDGE type electron transport complex subunit H 
24Avin_50930 (rnfE1)5162986..5163702 [-], 717226947082RnfABCDGE type electron transport complex subunit E 
25Avin_50940 (rnfG1)5163716..5164405 [-], 690226947083RnfABCDGE type electron transport complex subunit G 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Hcp

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Avin_508205151416..5151913 [+], 498226947071hypothetical protein Hcp

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Proteins        Genes
N/A
N/A