SecReT6
I. Summary
SecReT6 ID337 insolico
StrainTolumonas auensis DSM 9187
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012691
Location212136..234045
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Tola_0191210792..211256 [-], 465237806967YbaK/prolyl-tRNA synthetase associated domain-containing protein 
2Tola_0192211572..211853 [-], 282237806968hypothetical protein 
3Tola_0193212136..213677 [+], 1542237806969type VI secretion-associated protein  TssA
4Tola_0194213691..214185 [+], 495237806970type VI secretion protein  TssB
5Tola_0195214204..215679 [+], 1476237806971type VI secretion protein EvpB  TssC
6Tola_0196215682..216095 [+], 414237806972type VI secretion system lysozyme-like protein  TssE
7Tola_0197216085..217842 [+], 1758237806973type VI secretion protein  TssF
8Tola_0198217806..218825 [+], 1020237806974type VI secretion protein  TssG
9Tola_0199218812..221421 [+], 2610237806975type VI secretion ATPase, ClpV1 family  TssH
10Tola_0200221430..222434 [+], 1005237806976Fis family sigma-54 specific transcriptional regulator  Sfa2
11Tola_0201222434..222571 [+], 138237806977hypothetical protein 
12Tola_0202222575..223870 [+], 1296237806978FHA domain-containing protein  Fha
13Tola_0203223876..224427 [+], 552237806979type VI secretion lipoprotein  TssJ
14Tola_0204224501..225844 [+], 1344237806980type VI secretion protein  TssK
15Tola_0205225846..226712 [+], 867237806981DotU family type IV / VI secretion system protein  TssL
16Tola_0206226709..230230 [+], 3522237806982type VI secretion protein IcmF  TssM
17Tola_0207230238..230972 [+], 735237806983protein serine/threonine phosphatase 
18Tola_0208231013..231915 [+], 903237806984serine/threonine protein kinase 
19Tola_0209231934..234045 [+], 2112237806985ImpA family type VI secretion-associated protein  TssI
20Tola_0210234171..235781 [+], 1611237806986glutamate/cysteine ligase 
21Tola_0211235816..236493 [-], 678237806987glutathione S-transferase 
22Tola_0212236831..238168 [+], 1338237806988citrate carrier protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Tola_0342385297..385815 [-], 519237807118type VI secretion system effector PSPTO_5435

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Proteins        Genes
N/A
N/A