SecReT6
I. Summary
SecReT6 ID338 insolico
StrainBurkholderia glumae BGR1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_012721
Location154493..188085
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bglu_2g01360149529..150077 [+], 549238023627Fimbrial protein 
2bglu_2g01370150173..150952 [+], 780238023628Pili assembly chaperone 
3bglu_2g01380151021..153837 [+], 2817238023629P pilus assembly protein porin PapC 
4bglu_2g01390153938..154474 [+], 537238023630P pilus assembly protein, pilin FimA 
5bglu_2g01400154493..155251 [+], 759238023631DotU family type IV / VI secretion system protein  TssL
6bglu_2g01410155248..156957 [+], 1710238023632outer membrane protein  TagL
7bglu_2g01420157164..157697 [+], 534238023633type VI secretion protein  TssB
8bglu_2g01430157775..159277 [+], 1503238023634EvpB family type VI secretion protein  TssC
9bglu_2g01440159409..159891 [+], 483238023635type VI secretion system effector  TssD
10bglu_2g01450160040..160594 [+], 555238023636type VI secretion lipoprotein  TssJ
11bglu_2g01460160591..161940 [+], 1350238023637type VI secretion protein  TssK
12bglu_2g01470161937..163253 [+], 1317238023638hypothetical protein  TssL
13bglu_2g01480163266..167363 [+], 4098238023639type VI secretion protein IcmF  TssM
14bglu_2g01490167381..169438 [+], 2058238023640ImpA family type VI secretion-associated protein  TssI
15bglu_2g01500169629..172157 [+], 2529238023641ImpA family type VI secretion-associated protein  TssI
16bglu_2g01510172236..172499 [+], 264238023642Rhs family protein  PAAR
17bglu_2g01520172584..175994 [+], 3411238023643Rhs family protein 
18bglu_2g01530175899..177299 [-], 1401238023644hypothetical protein 
19bglu_2g01540177345..178352 [-], 1008238023645Fimbrial protein 
20bglu_2g01550178418..179482 [-], 1065238023646type VI secretion-associated protein, ImpA family  TssA
21bglu_2g01560179501..180571 [-], 1071238023647type VI secretion protein  TssG
22bglu_2g01570180568..182448 [-], 1881238023648type VI secretion protein  TssF
23bglu_2g01580182450..182968 [-], 519238023649type VI secretion system lysozyme-like protein  TssE
24bglu_2g01590182965..183798 [-], 834238023650Virulence protein, SciE type  TagJ
25bglu_2g01600183782..184969 [-], 1188238023651hypothetical protein 
26bglu_2g01610185284..188085 [+], 2802238023652type VI secretion ATPase, ClpV1 family  TssH
27bglu_2g01620188400..190721 [+], 2322238023653two-component system sensor-response regulator hybrid protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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