SecReT6
I. Summary
SecReT6 ID339 insolico
StrainBurkholderia glumae BGR1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_012721
Location245401..260691
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000101100
ComponentTssGTssJTssKTssM
Number0001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bglu_2g02080240629..241309 [-], 681238023685hypothetical protein 
2bglu_2g02090242081..243724 [+], 1644238023686methyl-accepting chemotaxis sensory transducer 
3bglu_2g02120245401..245859 [+], 459238023687type VI secretion protein  TssB
4bglu_2g02130245902..247434 [+], 1533238023688EvpB family type VI secretion protein  TssC
5bglu_2g02140247532..249883 [+], 2352238023689ImpA family type VI secretion-associated protein  TssI
6bglu_2g02150249883..250863 [+], 981238023690hypothetical protein 
7bglu_2g02160250866..251663 [+], 798238023691hypothetical protein 
8bglu_2g02170251656..253911 [+], 2256238023692hypothetical protein 
9bglu_2g02180253964..255535 [+], 1572238023693hypothetical protein  PAAR
10bglu_2g02190255623..255880 [+], 258238023694PAAR repeat-containing protein  PAAR
11bglu_2g02200255884..257173 [+], 1290238023695hypothetical protein 
12bglu_2g02210257170..260691 [+], 3522238023696ImcF domain-containing protein  TssM
13bglu_2g02230260910..262055 [-], 1146238023697diguanylate cyclase 
14bglu_2g02240262748..263323 [-], 576238023698pyridoxamine 5'-phosphate oxidase family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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