SecReT6
I. Summary
SecReT6 ID34 insolico
StrainYersinia pestis KIM10+
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_004088
Location4055920..4092476
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1y3651 (tbpA)4051616..4052608 [+], 993161484745thiamine transporter substrate binding subunit 
2y3652 (thiP)4052572..4054191 [+], 162022127526thiamine transporter membrane protein 
3y3653 (thiQ)4054178..4054888 [+], 711229013123thiamine transporter ATP-binding subunit 
4y36544054957..4055724 [-], 76822127528hypothetical protein 
5y3655 (polB)4055920..4058289 [+], 237022127529DNA polymerase II 
6y3656 (hepA)4058750..4061656 [+], 290722127530ATP-dependent helicase HepA 
7y36574061912..4062271 [-], 36022127531hypothetical protein 
8y36584062287..4065781 [-], 349522127532hypothetical protein  TssM
9y36594065790..4067427 [-], 163822127533hypothetical protein  TssL
10y36604067397..4068770 [-], 137422127534hypothetical protein  TssK
11y36614068872..4069246 [-], 37522127535lipoprotein  TssJ
12y36624069356..4069721 [-], 36622127536hypothetical protein  PAAR
13y36634069727..4070344 [-], 61822127537hypothetical protein 
14y36644070337..4071440 [-], 110422127538hypothetical protein 
15y36654071466..4073685 [-], 222022127539hypothetical protein 
16y36684073698..4076046 [-], 234922127540hypothetical protein  TssI
17y36694076150..4078753 [-], 260422127543ATP-dependent protease  TssH
18y36704078756..4079778 [-], 102322127544hypothetical protein  TssG
19y36714079732..4081576 [-], 184522127545hypothetical protein  TssF
20y36724081609..4082052 [-], 44422127546hypothetical protein  TssE
21y36734082126..4082644 [-], 51922127547hypothetical protein  TssD
22y36744082807..4084318 [-], 151222127548hypothetical protein  TssC
23y36754084318..4084878 [-], 56122127549hypothetical protein  TssB
24y36764084889..4085902 [-], 101422127550hypothetical protein  TssA
25y36774086232..4086975 [+], 74422127551hypothetical protein 
26y36784088198..4088818 [+], 62122127552ribosomal large subunit pseudouridine synthase A 
27y3679 (djlA)4089116..4089949 [-], 83422127553Dna-J like membrane chaperone protein 
28y3680 (imp)4090134..4092476 [+], 2343161484744organic solvent tolerance protein 
29y3681 (surA)4092544..4093848 [+], 130522127555peptidyl-prolyl cis-trans isomerase SurA 
30y3682 (pdxA)4093820..4094827 [+], 1008221275564-hydroxythreonine-4-phosphate dehydrogenase 
31y3683 (ksgA)4094820..4095638 [+], 81922127557dimethyladenosine transferase 
32y3684 (apaG)4095652..4096029 [+], 37822127558ApaG 
33y3685 (apaH)4096046..4096915 [+], 87022127559diadenosine tetraphosphatase 
34y36864097005..4097469 [-], 46522127560hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3558 , YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1y36684073698..4076046 [-], 234922127540hypothetical protein YPK_3558
2y36734082126..4082644 [-], 51922127547hypothetical protein YPK_3563

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation