SecReT6
I. Summary
SecReT6 ID340 insolico
StrainBurkholderia glumae BGR1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_012721
Location717236..730208
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000100001
ComponentTssGTssJTssKTssM
Number0101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bglu_2g05930714135..715013 [-], 879238024039formyltetrahydrofolate deformylase 
2bglu_2g05960717236..719599 [+], 2364238024040Rhs element Vgr protein  TssI
3bglu_2g05970719605..722010 [+], 2406238024041peptidase M23 
4bglu_2g05980722612..722872 [+], 261238024042PAAR repeat-containing protein  PAAR
5bglu_2g05990722875..724224 [+], 1350238024043hypothetical protein 
6bglu_2g06000724205..727768 [+], 3564238024044ImcF-like protein  TssM
7bglu_2g06010727915..729675 [+], 1761238024045type VI secretion protein  TssF
8bglu_2g06020729672..730208 [+], 537238024046type VI secretion lipoprotein  TssJ
9bglu_2g06060732393..732755 [-], 363238024047transposase 
10bglu_2g06080733315..734460 [+], 1146238024048outer membrane porin OpcP 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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