SecReT6
I. Summary
SecReT6 ID341 insolico
StrainBurkholderia glumae BGR1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_012721
Location878998..900488
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011110111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bglu_2g07330874171..875142 [+], 972238024155Sigma 54-dependent transcriptional activator 
2bglu_2g07340878998..880143 [-], 1146238024156type VI secretion system protein EvpK  TssA
3bglu_2g07350880140..884159 [-], 4020238024157type VI secretion protein IcmF  TssM
4bglu_2g07360884185..884964 [-], 780238024158type IV / VI secretion system protein DotU  TssL
5bglu_2g07370884957..886405 [-], 1449238024159type VI secretion protein  TssK
6bglu_2g07380886446..886916 [-], 471238024160hypothetical protein 
7bglu_2g07390886920..887318 [-], 399238024161hypothetical protein 
8bglu_2g07400887357..887911 [-], 555238024162hypothetical protein 
9bglu_2g07410887911..888981 [-], 1071238024163pentapeptide repeat-containing protein 
10bglu_2g07420888978..891614 [-], 2637238024164pentapeptide repeat-containing protein 
11bglu_2g07430891621..894263 [-], 2643238024165Rhs element Vgr protein  TssI
12bglu_2g07440894260..895084 [-], 825238024166quinoprotein dehydrogenase  TssG
13bglu_2g07450895419..897269 [-], 1851238024167type VI secretion system protein ImpG  TssF
14bglu_2g07460897277..897654 [-], 378238024168hypothetical protein  TssE
15bglu_2g07470897718..898275 [-], 558238024169type VI secretion system effector  TssD
16bglu_2g07480898308..900488 [-], 2181238024170EvpB/family type VI secretion protein  TssC
17bglu_2g07490901520..904822 [+], 3303238024171multidrug resistance protein MdtC 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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