SecReT6
I. Summary
SecReT6 ID342 insolico
StrainBurkholderia glumae BGR1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_012721
Location1382281..1422638
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bglu_2g108001378589..1380013 [+], 1425238024482hypothetical protein 
2bglu_2g108201380562..1381587 [+], 1026238024483putative oxidoreductase, MocA 
3bglu_2g108301382281..1385334 [+], 3054238024484Rhs element Vgr protein  TssI
4bglu_2g108401385927..1387738 [+], 1812238024485putative LysM domain-containing protein 
5bglu_2g108501387725..1388255 [+], 531238024486hypothetical protein 
6bglu_2g108601388418..1388756 [+], 339238024487hypothetical protein 
7bglu_2g108701388807..1389592 [-], 786238024488hypothetical protein 
8bglu_2g108801389700..1390335 [-], 636238024489HAD superfamily hydrolase 
9bglu_2g108901390728..1391885 [-], 1158238024490alcohol dehydrogenase GroES domain-containing protein 
10bglu_2g109101393584..1394141 [-], 558238024491type VI secretion lipoprotein  TssJ
11bglu_2g109201394290..1395411 [-], 1122238024492type VI secretion protein  TssG
12bglu_2g109301395408..1397222 [-], 1815238024493type VI secretion protein  TssF
13bglu_2g109401397235..1398821 [-], 1587238024494type VI secretion-associated protein  TssA
14bglu_2g109501398818..1402342 [-], 3525238024495ImcF domain-containing protein  TssM
15bglu_2g109901404933..1405184 [-], 252238024496PAAR repeat-containing protein  PAAR
16bglu_2g110001405236..1405982 [-], 747238024497hypothetical protein 
17bglu_2g110101405979..1408828 [-], 2850238024498hypothetical protein 
18bglu_2g110201408880..1409833 [-], 954238024499hypothetical protein 
19bglu_2g110301409841..1412201 [-], 2361238024500Htype VI secretion system Vgr family protein  TssI
20bglu_2g110401412299..1413831 [-], 1533238024501EvpB family type VI secretion protein  TssC
21bglu_2g110501413874..1414386 [-], 513238024502type VI secretion protein  TssB
22bglu_2g110601414882..1416234 [+], 1353238024503type VI secretion protein  TssK
23bglu_2g110701416231..1416962 [+], 732238024504DotU family type IV / VI secretion system protein  TssL
24bglu_2g110801416959..1418767 [+], 1809238024505OmpA/MotB domain-containing protein  TagL
25bglu_2g110901418865..1419350 [+], 486238024506type VI secretion system effector  TssD
26bglu_2g111001419488..1422196 [+], 2709238024507type VI secretion ATPase, ClpV1 family  TssH
27bglu_2g111101422210..1422638 [+], 429238024508type VI secretion system lysozyme-like protein  TssE
28bglu_2g111201422882..1423388 [+], 507238024509hypothetical protein 
29bglu_2g111301423466..1424815 [-], 1350238024510hypothetical protein 
30bglu_2g111401425483..1427606 [+], 2124238024511hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1bglu_2g110901418865..1419350 [+], 486238024506type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A