SecReT6
I. Summary
SecReT6 ID343 insolico
StrainBurkholderia glumae BGR1
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_012724
Location397352..417437
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bglu_1g03840395986..397173 [+], 1188238026056diguanylate cyclase 
2bglu_1g03850397352..398143 [-], 792238026057OmpA family protein  TssL
3bglu_1g03860398140..399486 [-], 1347238026058type VI secretion system protein TssK  TssK
4bglu_1g03870399588..400205 [-], 618238026059type VI secretion system protein TssJ  TssJ
5bglu_1g03880400575..401219 [+], 645238026060TPR repeat-containing protein 
6bglu_1g03890401263..401802 [+], 540238026061type VI secretion system protein TssB  TssB
7bglu_1g03900401817..403307 [+], 1491238026062type VI secretion system protein TssC  TssC
8bglu_1g03910403385..403888 [+], 504238026063type VI secretion system protein TssD  TssD
9bglu_1g03920403965..404447 [+], 483238026064type VI secretion system protein TssE  TssE
10bglu_1g03930404540..406378 [+], 1839238026065type VI secretion system protein TssF  TssF
11bglu_1g03940406342..407439 [+], 1098238026066type VI secretion system protein TssG  TssG
12bglu_1g03950407505..410174 [+], 2670238026067type VI secretion system protein TssH  TssH
13bglu_1g03960410265..411407 [+], 1143238026068type VI secretion system protein TssA  TssA
14bglu_1g03970411501..412568 [-], 1068238026069OmpA/MotB  TagL
15bglu_1g03980412573..413565 [-], 993238026070type VI secretion-associated protein 
16bglu_1g03990413562..417437 [-], 3876238026071type VI secretion protein IcmF  TssM
17bglu_1g04000417703..418554 [-], 852238026072peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 
18bglu_1g04010418678..419637 [+], 960238026073hypothetical protein 
19bglu_1g04020420035..421057 [+], 1023238026074Mg2+/Co2+ transporter 
20bglu_1g04030421130..421282 [-], 153238026075XapX domain-containing protein 
21bglu_1g04040421324..422301 [-], 978238026076zinc-containing alcohol dehydrogenase superfamily 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1bglu_1g03910403385..403888 [+], 504238026063type VI secretion system protein TssD BCAL0343

Download FASTA format files
Proteins        Genes
N/A
N/A