SecReT6
I. Summary
SecReT6 ID347 insolico
StrainVariovorax paradoxus S110
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_012791
Location199429..228629
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Vapar_0191198109..199296 [+], 1188239813210fumarylacetoacetate (FAA) hydrolase 
2Vapar_0192199429..200520 [+], 1092239813211ImpA family type VI secretion-associated protein  TssA
3Vapar_0193200601..201170 [+], 570239813212type VI secretion protein  TssB
4Vapar_0194201189..202697 [+], 1509239813213EvpB family type VI secretion protein  TssC
5Vapar_0195202747..203229 [+], 483239813214hypothetical protein  TssD
6Vapar_0196203343..204209 [+], 867239813215virulence protein SciE type  TagJ
7Vapar_0197204239..204766 [+], 528239813216type VI secretion system lysozyme-like protein  TssE
8Vapar_0198204767..206638 [+], 1872239813217type VI secretion protein  TssF
9Vapar_0199206635..207801 [+], 1167239813218type VI secretion protein  TssG
10Vapar_0200207798..210524 [+], 2727239813219type VI secretion ATPase, ClpV1 family  TssH
11Vapar_0201210545..212878 [+], 2334239813220type VI secretion system Vgr family protein  TssI
12Vapar_0202213018..213347 [+], 330239813221hypothetical protein 
13Vapar_0203213347..216007 [+], 2661239813222pentapeptide repeat-containing protein 
14Vapar_0204216004..217080 [+], 1077239813223pentapeptide repeat-containing protein 
15Vapar_0205217178..217798 [+], 621239813224hypothetical protein 
16Vapar_0206217824..218210 [+], 387239813225hypothetical protein 
17Vapar_0207218230..219039 [-], 810239813226protein serine/threonine phosphatase 
18Vapar_0208219032..220969 [-], 1938239813227FHA domain containing protein  Fha
19Vapar_0209221013..221417 [-], 405239813228hypothetical protein 
20Vapar_0210221594..222064 [+], 471239813229type VI secretion lipoprotein  TssJ
21Vapar_0211222227..223603 [+], 1377239813230type VI secretion protein  TssK
22Vapar_0212223612..224994 [+], 1383239813231hypothetical protein  TssL
23Vapar_0213224994..228629 [+], 3636239813232type VI secretion protein IcmF  TssM
24Vapar_0214228631..229356 [+], 726239813233type VI secretion-associated protein 
25Vapar_0215229388..231559 [+], 2172239813234serine/threonine protein kinase 
26Vapar_0216231588..233141 [-], 1554239813235Mg chelatase subunit ChlI 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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