SecReT6
I. Summary
SecReT6 ID350 insolico
StrainDesulfovibrio salexigens DSM 2638
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012881
Location449554..477085
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Desal_0414446781..447125 [+], 345242277891hypothetical protein 
2Desal_0415447142..447399 [-], 258242277892hypothetical protein 
3Desal_0416447471..449222 [-], 1752242277893hypothetical protein 
4Desal_0417449554..451098 [+], 1545242277894type VI secretion-associated protein  TssA
5Desal_0418451144..451626 [+], 483242277895type VI secretion protein  TssB
6Desal_0419451639..453120 [+], 1482242277896type VI secretion protein EvpB  TssC
7Desal_0420453206..453688 [+], 483242277897type VI secretion system effector  TssD
8Desal_0421453740..454159 [+], 420242277898type VI secretion system lysozyme-like protein  TssE
9Desal_0422454194..455924 [+], 1731242277899type VI secretion protein  TssF
10Desal_0423455888..456928 [+], 1041242277900type VI secretion protein  TssG
11Desal_0424456925..459570 [+], 2646242277901ATPase AAA  TssH
12Desal_0425459592..461901 [+], 2310242277902Rhs element Vgr protein  TssI
13Desal_0426461914..465747 [+], 3834242277903pentapeptide repeat-containing protein 
14Desal_0427465744..466805 [+], 1062242277904pentapeptide repeat-containing protein 
15Desal_0428466958..467581 [+], 624242277905hypothetical protein 
16Desal_0429467599..468003 [+], 405242277906hypothetical protein 
17Desal_0430468195..468968 [+], 774242277907hypothetical protein 
18Desal_0431469087..470541 [-], 1455242277908hypothetical protein  TssC
19Desal_0432470739..471311 [+], 573242277909type VI secretion lipoprotein  TssJ
20Desal_0433471315..472694 [+], 1380242277910type VI secretion protein  TssK
21Desal_0434472763..473488 [+], 726242277911DotU family type IV / VI secretion system protein  TssL
22Desal_0435473582..477085 [+], 3504242277912hypothetical protein  TssM
23Desal_0436477096..477815 [+], 720242277913hypothetical protein 
24Desal_0437478042..479313 [-], 1272242277914nitrogenase cofactor biosynthesis protein NifB 
25Desal_0438479349..480707 [-], 1359242277915nitrogenase 
26Desal_0439480710..482074 [-], 1365242277916nitrogenase MoFe cofactor biosynthesis protein NifE 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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