SecReT6
I. Summary
SecReT6 ID351 insolico
StrainDickeya zeae Ech1591
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012912
Location3170635..3190930
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101021111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Dd1591_27883165658..3166518 [+], 861251790370aminotransferase class IV 
2Dd1591_27893166543..3167121 [-], 579251790371TetR family transcriptional regulator 
3Dd1591_27903167239..3168117 [+], 879251790372hypothetical protein 
4Dd1591_27913168204..3169136 [-], 933251790373hypothetical protein 
5Dd1591_27923169198..3170565 [-], 1368251790374Sel1 domain-containing protein repeat-containing protein 
6Dd1591_27933170635..3172068 [-], 1434251790375ImpA domain-containing protein  TssA
7Dd1591_27943172120..3175617 [-], 3498251790376type VI secretion protein IcmF  TssM
8Dd1591_27953175643..3177082 [-], 1440251790377type VI secretion-associated protein  TssA
9Dd1591_27963177094..3177657 [-], 564251790378type VI secretion-associated protein 
10Dd1591_27973177657..3179195 [-], 1539251790379putative sigma54 specific transcriptional regulator 
11Dd1591_27983179198..3181816 [-], 2619251790380type VI secretion ATPase, ClpV1 family  TssH
12Dd1591_27993181832..3182608 [-], 777251790381type IV / VI secretion system protein, DotU family  TssL
13Dd1591_28003182625..3183962 [-], 1338251790382type VI secretion protein  TssK
14Dd1591_28013183965..3184501 [-], 537251790383type VI secretion lipoprotein, VC_A0113 family  TssJ
15Dd1591_28023184501..3185730 [-], 1230251790384FHA domain-containing protein  Fha
16Dd1591_28033185733..3186746 [-], 1014251790385type VI secretion protein  TssG
17Dd1591_28043186710..3188476 [-], 1767251790386type VI secretion protein  TssF
18Dd1591_28053188479..3188910 [-], 432251790387type VI secretion system lysozyme-related protein  TssE
19Dd1591_28063188917..3190395 [-], 1479251790388EvpB/VC_A0108 family type VI secretion protein  TssC
20Dd1591_28073190427..3190930 [-], 504251790389type VI secretion protein  TssB
21Dd1591_28083192025..3193182 [-], 1158251790390amidohydrolase 
22Dd1591_28093193420..3193872 [+], 453251790391hypothetical protein 
23Dd1591_28103193948..3194268 [-], 321251790392hypothetical protein 
24Dd1591_28123194554..3195006 [-], 453251790393hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866 , Dda3937_01758, Dda3937_01758, ECA2866, ECA2866, Dda3937_01758, ECA2866, Dda3937_01758, ECA3427, ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Dd1591_0417480420..480938 [+], 519251788063Hcp1 family type VI secretion system effector ECA2866
2Dd1591_0420483390..487817 [+], 4428251788066YD repeat protein Dda3937_01758
3Dd1591_11601322501..1326772 [-], 4272251788785YD repeat protein Dda3937_01758
4Dd1591_11631329170..1329688 [-], 519251788788Hcp1 family type VI secretion system effector ECA2866
5Dd1591_15011717937..1718455 [+], 519251789117Hcp1 family type VI secretion system effector ECA2866
6Dd1591_15041720854..1725227 [+], 4374251789120YD repeat protein Dda3937_01758
7Dd1591_25582918466..2918984 [+], 519251790156Hcp1 family type VI secretion system effector ECA2866
8Dd1591_25682925892..2928687 [+], 2796251790163YD repeat protein Dda3937_01758
9Dd1591_28253212635..3214671 [-], 2037251790406type VI secretion system Vgr family protein ECA3427
10Dd1591_28263214837..3215355 [-], 519251790407Hcp1 family type VI secretion system effector ECA2866

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Proteins        Genes
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