SecReT6
I. Summary
SecReT6 ID353 insolico
StrainPectobacterium carotovorum subsp. carotovorum PC1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012917
Location3647323..3672243
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PC1_32343643142..3644059 [-], 918253689600hypothetical protein 
2PC1_32353644056..3645012 [-], 957253689601hypothetical protein 
3PC1_32363645164..3645943 [-], 780253689602Ankyrin 
4PC1_32373645943..3647313 [-], 1371253689603PAAR repeat-containing protein  PAAR
5PC1_32383647323..3649359 [-], 2037253689604type VI secretion system Vgr family protein  TssI
6PC1_32393649589..3650107 [-], 519253689605Hcp1 family type VI secretion system effector  TssD
7PC1_32403650646..3651998 [-], 1353253689606Sel1 domain-containing protein repeat-containing protein 
8PC1_32413652030..3653466 [-], 1437253689607ImpA domain-containing protein  TssA
9PC1_32423653515..3657012 [-], 3498253689608type VI secretion protein IcmF  TssM
10PC1_32433657037..3658461 [-], 1425253689609type VI secretion-associated protein  TssA
11PC1_32443658473..3659033 [-], 561253689610type VI secretion-associated protein 
12PC1_32453659033..3660571 [-], 1539253689611Sigma 54 interacting domain-containing protein 
13PC1_32463660574..3663171 [-], 2598253689612type VI secretion ATPase, ClpV1 family  TssH
14PC1_32473663185..3663961 [-], 777253689613type IV / VI secretion system protein, DotU family  TssL
15PC1_32483663977..3665314 [-], 1338253689614type VI secretion protein  TssK
16PC1_32493665317..3665838 [-], 522253689615type VI secretion lipoprotein, VC_A0113 family  TssJ
17PC1_32503665838..3667058 [-], 1221253689616putative FHA domain-containing protein  Fha
18PC1_32513667061..3668059 [-], 999253689617type VI secretion protein  TssG
19PC1_32523668023..3669789 [-], 1767253689618type VI secretion protein  TssF
20PC1_32533669792..3670223 [-], 432253689619type VI secretion system lysozyme-like protein  TssE
21PC1_32543670229..3671707 [-], 1479253689620EvpB family type VI secretion protein  TssC
22PC1_32553671740..3672243 [-], 504253689621type VI secretion protein  TssB
23PC1_32563673656..3676088 [+], 2433253689622CRISPR-associated protein, Csm1 family 
24PC1_32573676113..3676496 [+], 384253689623CRISPR-associated protein, Csm2 family 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Dda3937_01758 , ECA3427, ECA2866, ECA0456, ECA3427, ECA3427, ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PC1_005156584..60897 [-], 4314253686459YD repeat-containing protein Dda3937_01758
2PC1_005361325..63178 [-], 1854253686461type VI secretion system Vgr family protein ECA3427
3PC1_005463269..63787 [-], 519253686462Hcp1 family type VI secretion system effector ECA2866
4PC1_0441503878..504357 [-], 480253686843Hcp1 family type VI secretion system effector ECA0456
5PC1_21882518230..2520200 [-], 1971253688573type VI secretion system Vgr family protein ECA3427
6PC1_32383647323..3649359 [-], 2037253689604type VI secretion system Vgr family protein ECA3427
7PC1_32393649589..3650107 [-], 519253689605Hcp1 family type VI secretion system effector ECA2866

Download FASTA format files
Proteins        Genes
N/A
N/A