SecReT6
I. Summary
SecReT6 ID354 insolico
StrainGeobacter sp. M21
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012918
Location1407063..1425222
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1GM21_11991402962..1405850 [+], 2889253699829multi-sensor hybrid histidine kinase 
2GM21_12001406038..1406538 [-], 501253699830molybdopterin-guanine dinucleotide biosynthesis protein B 
3GM21_1201 (tatA)1406590..1406787 [-], 198253699831twin arginine translocase protein A 
4GM21_12021407063..1407551 [+], 489253699832type VI secretion lipoprotein  TssJ
5GM21_12031407548..1408942 [+], 1395253699833type VI secretion protein  TssK
6GM21_12041408963..1409622 [+], 660253699834DotU family type IV / VI secretion system protein  TssL
7GM21_12051409638..1413042 [+], 3405253699835hypothetical protein  TssM
8GM21_12061413053..1414372 [+], 1320253699836type VI secretion-associated protein, ImpA family  TssA
9GM21_12071414396..1414926 [+], 531253699837type VI secretion protein  TssB
10GM21_12081414938..1416425 [+], 1488253699838type VI secretion protein EvpB  TssC
11GM21_12091416439..1416936 [+], 498253699839type VI secretion system effector  TssD
12GM21_12101416981..1417418 [+], 438253699840type VI secretion system lysozyme-like protein  TssE
13GM21_12111417426..1419198 [+], 1773253699841type VI secretion protein  TssF
14GM21_12121419213..1420247 [+], 1035253699842type VI secretion protein  TssG
15GM21_12131420289..1421395 [+], 1107253699843hypothetical protein 
16GM21_12141421397..1422227 [+], 831253699844ankyrin 
17GM21_12151422292..1423122 [+], 831253699845ankyrin 
18GM21_12161423171..1425222 [+], 2052253699846ImpA family type VI secretion-associated protein  TssI
19GM21_12171425258..1425791 [+], 534253699847hypothetical protein 
20GM21_12181425812..1426210 [+], 399253699848hypothetical protein 
21GM21_12191426388..1427131 [+], 744253699849hypothetical protein 
22GM21_12201427187..1427477 [+], 291253699850hypothetical protein 
23GM21_12211427581..1428237 [+], 657253699851PA-phosphatase like phosphoesterase 
24GM21_12221428491..1428934 [+], 444253699852hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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