SecReT6
I. Summary
SecReT6 ID355 insolico
StrainPhotorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012962
Location286872..321972
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111221111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PAU_00258282670..283041 [-], 372253987741hypothetical protein 
2PAU_00259283292..284311 [-], 1020253987742hypothetical protein 
3PAU_00260284325..285923 [-], 1599253987743hypothetical protein 
4PAU_00261285946..286872 [-], 927253987744hypothetical protein 
5PAU_00262286872..288842 [-], 1971253987745hypothetical protein  TssI
6PAU_00263289015..289284 [-], 270253987746hypothetical protein  PAAR
7PAU_00264289580..290272 [-], 693253987747hypothetical protein 
8PAU_00265290892..291038 [+], 147253987748hypothetical protein 
9PAU_00266291547..292860 [-], 1314253987749hypothetical protein 
10PAU_00267293168..293614 [-], 447253987750hypothetical protein 
11PAU_00268293976..294974 [-], 999253987751hypothetical protein 
12PAU_00269295328..295516 [-], 189253987752hypothetical protein 
13PAU_00270295761..296453 [-], 693253987753hypothetical protein 
14PAU_00271296455..297765 [-], 1311253987754hypothetical protein 
15PAU_00272297799..298794 [-], 996253987755hypothetical protein 
16PAU_00273298797..300761 [-], 1965253987756hypothetical protein  TssI
17PAU_00274300795..302141 [-], 1347253987757hypothetical protein  TssA
18PAU_00275302194..305739 [-], 3546253987758hypothetical protein  TssM
19PAU_00276305736..307046 [-], 1311253987759hypothetical protein  TssA
20PAU_00277307169..307816 [-], 648253987760hypothetical protein 
21PAU_00278307813..308613 [-], 801253987761hypothetical protein 
22PAU_00279308610..311249 [-], 2640253987762ClpA/B-type chaperone  TssH
23PAU_00280311260..312030 [-], 771253987763hypothetical protein  TssL
24PAU_00281312030..313382 [-], 1353253987764hypothetical protein  TssK
25PAU_00282313385..313939 [-], 555253987765hypothetical protein  TssJ
26PAU_00283313939..315225 [-], 1287253987766hypothetical protein  Fha
27PAU_00284315232..316212 [-], 981253987767hypothetical protein  TssG
28PAU_00285316248..318077 [-], 1830253987768hypothetical protein  TssF
29PAU_00286318080..318520 [-], 441253987769hypothetical protein  TssE
30PAU_00287318527..320005 [-], 1479253987770hypothetical protein  TssC
31PAU_00288320029..320526 [-], 498253987771hypothetical protein  TssB
32PAU_00289321454..321972 [+], 519253987772hypothetical protein  TssD
33PAU_00290322635..323477 [+], 843253987773hypothetical protein 
34PAU_00291 (gor)323573..324940 [+], 1368253987774glutathione reductase 
35PAU_00292325106..326020 [+], 915253987775hypothetical protein 
36PAU_00293326139..326315 [+], 177253987776hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PAU_00289321454..321972 [+], 519253987772hypothetical protein ECA2866

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Proteins        Genes
N/A
N/A