SecReT6
I. Summary
SecReT6 ID357 insolico
StrainPhotorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012962
Location3575095..3601540
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number021101101
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PAU_030343572008..3572697 [+], 690253990508LuxR family transcription regulator 
2PAU_030353572737..3573423 [+], 687253990509hypothetical protein 
3PAU_030363573449..3574117 [+], 669253990510hypothetical protein 
4PAU_030373574221..3574391 [-], 171253990511hypothetical protein 
5PAU_030383574541..3575038 [-], 498253990512hypothetical protein 
6PAU_030393575095..3576147 [-], 1053253990513hypothetical protein  TssG
7PAU_030403576147..3578030 [-], 1884253990514hypothetical protein  TssF
8PAU_030413578063..3581410 [-], 3348253990515hypothetical protein  TssM
9PAU_030423581427..3582578 [-], 1152253990516hypothetical protein 
10PAU_030433582575..3582832 [-], 258253990517hypothetical protein  PAAR
11PAU_030443582829..3585306 [-], 2478253990518hypothetical protein 
12PAU_030453585294..3585809 [-], 516253990519membrane protein 
13PAU_030463585860..3586375 [-], 516253990520hypothetical protein 
14PAU_030473586356..3587168 [-], 813253990521hypothetical protein 
15PAU_03048 (vgrG4)3587172..3589571 [-], 2400253990522hypothetical protein  TssI
16PAU_030493589568..3589711 [-], 144253990523clpb protein 
17PAU_030503589955..3590446 [-], 492253990524hypothetical protein  TssD
18PAU_030513590451..3590654 [-], 204253990525hypothetical protein  TagL
19PAU_030523590712..3593189 [-], 2478253990526hypothetical protein 
20PAU_030533593177..3593692 [-], 516253990527membrane protein 
21PAU_030543593743..3594258 [-], 516253990528membrane protein 
22PAU_030553594309..3594890 [-], 582253990529membrane protein 
23PAU_030563595021..3595512 [-], 492253990530hypothetical protein  TssD
24PAU_030573595517..3597268 [-], 1752253990531hypothetical protein  TagL
25PAU_030583597265..3597930 [-], 666253990532membrane protein  TssL
26PAU_030593597927..3599276 [-], 1350253990533hypothetical protein  TssK
27PAU_030603599289..3600821 [-], 1533253990534hypothetical protein  TssC
28PAU_030613600881..3601540 [-], 660253990535hypothetical protein  TssB
29PAU_030623602475..3602834 [-], 360253990536hypothetical protein 
30PAU_03063 (ofn31)3603128..3603529 [-], 402253990537hypothetical protein 
31PAU_03064 (ofn32)3603526..3603792 [-], 267253990538hypothetical protein 
32PAU_030653604175..3604462 [-], 288253990539hypothetical protein 
33PAU_030663604459..3604710 [-], 252253990540hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529 , EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PAU_030503589955..3590446 [-], 492253990524hypothetical protein EC042_4529
2PAU_030563595021..3595512 [-], 492253990530hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
N/A