SecReT6
I. Summary
SecReT6 ID359 insolico
StrainTeredinibacter turnerae T7901
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012997
Location1689583..1720698
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1TERTU_16351685189..1685872 [-], 684254785734inner membrane protein YccA 
2TERTU_16361686037..1686729 [-], 693254785735ribonucleotide reductase, subunit alpha 
3TERTU_16371686740..1688899 [-], 2160254785736ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 
4TERTU_16391689583..1690065 [+], 483254785737type VI secretion system effector, Hcp1 family  TssD
5TERTU_16401690279..1692273 [+], 1995254785738type VI secretion system Vgr family protein  TssI
6TERTU_16411692285..1692845 [+], 561254785739hypothetical protein 
7TERTU_16421692855..1693835 [+], 981254785740hypothetical protein 
8TERTU_16431693846..1694226 [+], 381254785741hypothetical protein 
9TERTU_16441694256..1695485 [+], 1230254785742hypothetical protein 
10TERTU_16451695501..1695794 [-], 294254785743hypothetical protein 
11TERTU_16461695815..1696363 [-], 549254785744hypothetical protein 
12TERTU_16471696428..1699229 [-], 2802254785745hypothetical protein 
13TERTU_16481699226..1700575 [-], 1350254785746hypothetical protein 
14TERTU_1649 (clpV)1700803..1703538 [-], 2736254785747type VI secretion ATPase, ClpV1 family  TssH
15TERTU_16501703569..1704684 [-], 1116254785748type VI secretion protein  TssG
16TERTU_1651 (vasA)1704648..1706483 [-], 1836254785749type VI secretion protein  TssF
17TERTU_16521706476..1706973 [-], 498254785750type VI secretion system lysozyme-related protein  TssE
18TERTU_16531706985..1708421 [-], 1437254785751type VI secretion protein, EvpB/family  TssC
19TERTU_16541708411..1708533 [+], 123254785752hypothetical protein 
20TERTU_16561708917..1710413 [-], 1497254785753type VI secretion protein, EvpB/family  TssC
21TERTU_16571710403..1710924 [-], 522254785754type VI secretion protein  TssB
22TERTU_16581710954..1712075 [-], 1122254785755type VI secretion-associated protein, ImpA family  TssA
23TERTU_16601712682..1714319 [+], 1638254785756type VI secretion system FHA domain-containing protein  Fha
24TERTU_16611714351..1714839 [+], 489254785757type VI secretion lipoprotein  TssJ
25TERTU_16621714855..1716189 [+], 1335254785758type VI secretion protein  TssK
26TERTU_16631716202..1717110 [+], 909254785759type IV / VI secretion system protein, DotU family  TssL
27TERTU_1664 (icmF)1717165..1720698 [+], 3534254785760type VI secretion protein IcmF  TssM
28TERTU_16651720698..1721462 [+], 765254785761type VI secretion-associated protein, BMA_A0400 family 
29TERTU_16661721455..1722204 [+], 750254785762protein phosphatase 2C domain-containing protein 
30TERTU_16671722211..1724004 [+], 1794254785763protein kinase 
31TERTU_16681724009..1724956 [+], 948254785764protein kinase 
32TERTU_16691724958..1725200 [+], 243254785765hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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(1) Yang JC et al. (2009). The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). PLoS One. 4(7):e6085. [PudMed:19568419] in_silico
 
in_silico This literature contains bioinformatics investigation