SecReT6
I. Summary
SecReT6 ID361 insolico
StrainKangiella koreensis DSM 16069
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013166
Location2696217..2707664
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001011100
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Kkor_24932693329..2696076 [-], 2748256823707DNA polymerase I 
2Kkor_24942696217..2697707 [-], 1491256823708type VI secretion protein EvpB  TssC
3Kkor_24952697704..2698222 [-], 519256823709type VI secretion protein  TssB
4Kkor_24962698253..2699329 [-], 1077256823710type VI secretion-associated protein, ImpA family  TssA
5Kkor_24972699319..2700146 [-], 828256823711protein serine/threonine phosphatase 
6Kkor_24982700143..2700943 [-], 801256823712type VI secretion-associated protein 
7Kkor_24992700943..2704494 [-], 3552256823713type VI secretion protein IcmF  TssM
8Kkor_25002704496..2705815 [-], 1320256823714DotU family type IV/VI secretion system protein  TssL
9Kkor_25012705850..2707193 [-], 1344256823715type VI secretion protein  TssK
10Kkor_25022707203..2707664 [-], 462256823716type VI secretion lipoprotein  TssJ
11Kkor_25032707673..2709073 [-], 1401256823717FHA domain-containing protein  Fha
12Kkor_25042709437..2711524 [+], 2088256823718serine/threonine protein kinase 
13Kkor_25052711540..2712421 [-], 882256823719aspartoacylase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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