SecReT6
I. Summary
SecReT6 ID362 insolico
StrainCronobacter turicensis z3032
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013282
Location62476..116218
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CTU_0060057739..58755 [+], 1017260595852hypothetical protein 
2CTU_00610 (emrD)58658..59896 [-], 1239260595853multidrug resistance protein D 
3CTU_0062060048..60500 [-], 453260595854hypothetical protein 
4CTU_0063060558..60683 [+], 126260595855hypothetical protein 
5CTU_0064061894..62388 [+], 495260595856hypothetical protein 
6CTU_0065062476..62919 [+], 444260595857hypothetical protein  TssJ
7CTU_0066062944..64287 [+], 1344260595858hypothetical protein  TssK
8CTU_0067064398..65540 [+], 1143260595859hypothetical protein  TssL
9CTU_0068065522..69160 [+], 3639260595860hypothetical protein  TssM
10CTU_0069069177..69887 [+], 711260595861hypothetical protein 
11CTU_0070069897..70919 [+], 1023260595862hypothetical protein  TssA
12CTU_0071070965..71519 [+], 555260595863hypothetical protein  TssB
13CTU_0072071550..73022 [+], 1473260595864hypothetical protein  TssC
14CTU_0073073090..73509 [+], 420260595865hypothetical protein 
15CTU_0074073516..73944 [+], 429260595866hypothetical protein 
16CTU_0075073953..74081 [-], 129260595867hypothetical protein 
17CTU_00760 (hcp1)74150..74632 [+], 483260595868protein hcp1  TssD
18CTU_0077074719..75048 [+], 330260595869hypothetical protein  Rap2a (i)
19CTU_0078075071..75469 [+], 399260595870hypothetical protein 
20CTU_0079075466..75732 [-], 267260595871hypothetical protein 
21CTU_0080077053..77619 [+], 567260595872hypothetical protein  Fha
22CTU_0081077604..78410 [+], 807260595873hypothetical protein 
23CTU_0082078582..79421 [+], 840260595874hypothetical protein 
24CTU_0083079447..80280 [+], 834260595875hypothetical protein  TagJ
25CTU_0084080273..80845 [+], 573260595876hypothetical protein  TssE
26CTU_0085080848..82719 [+], 1872260595877hypothetical protein  TssF
27CTU_0086082716..83759 [+], 1044260595878hypothetical protein  TssG
28CTU_00870 (clpV1)83976..86591 [+], 2616260595879protein clpV1  TssH
29CTU_0088086622..88055 [+], 1434260595880hypothetical protein 
30CTU_0089088419..89645 [+], 1227260595881hypothetical protein 
31CTU_0090089711..90403 [+], 693260595882hypothetical protein 
32CTU_0091090495..93146 [+], 2652260595883hypothetical protein  TssI
33CTU_0092093275..93712 [+], 438260595884hypothetical protein 
34CTU_0093093778..94203 [+], 426260595885hypothetical protein 
35CTU_0094094460..98644 [+], 4185260595886hypothetical protein  rhsA (e)
36CTU_0095098637..99023 [+], 387260595887hypothetical protein 
37CTU_0096099229..99600 [+], 372260595888hypothetical protein 
38CTU_00970100070..100201 [+], 132260595889hypothetical protein 
39CTU_00980100241..100690 [+], 450260595890hypothetical protein 
40CTU_00990100702..101124 [+], 423260595891hypothetical protein 
41CTU_01000101228..103381 [+], 2154260595892hypothetical protein  TssI
42CTU_01010103383..104534 [+], 1152260595893hypothetical protein 
43CTU_01020104527..105822 [+], 1296260595894hypothetical protein 
44CTU_01030105833..106582 [+], 750260595895hypothetical protein 
45CTU_01040107286..110792 [+], 3507260595896hypothetical protein 
46CTU_01050110861..111862 [+], 1002260595897hypothetical protein 
47CTU_01060111901..112440 [+], 540260595898hypothetical protein 
48CTU_01070112574..112942 [+], 369260595899hypothetical protein 
49CTU_01080113116..113577 [+], 462260595900hypothetical protein 
50CTU_01090114098..114229 [+], 132260595901hypothetical protein 
51CTU_01100114266..116218 [+], 1953260595902hypothetical protein  TssI
52CTU_01110116215..116646 [+], 432260595903hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , SMA2263, ECL_01567

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Ctu_1p00460(hcp1)34824..35306 [+], 483260424421Protein hcp1 SMA2263
2CTU_00760(hcp1)74150..74632 [+], 483260595868protein hcp1 SMA2263
3CTU_0094094460..98644 [+], 4185260595886hypothetical protein ECL_01567

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Proteins        Genes

Homology Immunity protein list
SMA2265

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CTU_0077074719..75048 [+], 330260595869hypothetical protein SMA2265

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Proteins        Genes
N/A