SecReT6
I. Summary
SecReT6 ID363 insolico
StrainCronobacter turicensis z3032
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013282
Location1257937..1290071
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111110111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CTU_119701253686..1254099 [+], 414260596989hypothetical protein 
2CTU_119801254364..1254675 [+], 312260596990hypothetical protein 
3CTU_119901254680..1254979 [-], 300260596991hypothetical protein 
4CTU_120001255103..1256335 [-], 1233260596992hypothetical protein 
5CTU_12010 (ygaV)1256468..1256809 [+], 342260596993HTH-type transcriptional regulator ygaV 
6CTU_12020 (ygaP)1256775..1257344 [+], 570260596994Inner membrane protein YgaP 
7CTU_120301257459..1257944 [-], 486260596995hypothetical protein 
8CTU_120401257937..1259334 [-], 1398260596996hypothetical protein  TagL
9CTU_120501259548..1260150 [-], 603260596997hypothetical protein 
10CTU_120601260144..1261484 [-], 1341260596998hypothetical protein 
11CTU_120701261496..1262491 [-], 996260596999hypothetical protein 
12CTU_120801262496..1263539 [-], 1044260597000hypothetical protein  TssA
13CTU_120901263593..1264657 [-], 1065260597001hypothetical protein  TssG
14CTU_121001264621..1266501 [-], 1881260597002hypothetical protein  TssF
15CTU_12110 (clpB)1266974..1269748 [+], 2775260597003chaperone protein clpB  TssH
16CTU_12120 (F17a-A)1269822..1270352 [+], 531260597004F17 fimbrial protein 
17CTU_121301270443..1271201 [+], 759260597005hypothetical protein 
18CTU_121401271295..1273898 [+], 2604260597006hypothetical protein 
19CTU_121501273898..1274479 [+], 582260597007hypothetical protein 
20CTU_121601275122..1276624 [+], 1503260597008hypothetical protein  TssC
21CTU_12170 (hcp1)1276784..1277269 [+], 486260597009protein hcp1  TssD
22CTU_121801277481..1277984 [+], 504260597010hypothetical protein  TssJ
23CTU_121901277971..1279317 [+], 1347260597011hypothetical protein  TssK
24CTU_122001279386..1280660 [+], 1275260597012hypothetical protein  TssL
25CTU_122101280672..1284457 [+], 3786260597013hypothetical protein  TssM
26CTU_122201284471..1285130 [+], 660260597014hypothetical protein 
27CTU_122301285170..1287671 [+], 2502260597015hypothetical protein  TssI
28CTU_122401287729..1287989 [+], 261260597016hypothetical protein  PAAR
29CTU_122501287995..1288765 [+], 771260597017hypothetical protein 
30CTU_122601288788..1289579 [+], 792260597018hypothetical protein  TagJ
31CTU_122701289589..1290071 [+], 483260597019hypothetical protein  TssE
32CTU_122801290555..1292462 [-], 1908260597020hypothetical protein 
33CTU_122901292727..1293857 [-], 1131260597021gamma-glutamyl:cysteine ligase 
34CTU_123001294026..1294739 [+], 714260597022hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CTU_12170(hcp1)1276784..1277269 [+], 486260597009protein hcp1 ROD_27741

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Proteins        Genes
N/A
(1) Joseph S et al. (2012). Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 7(11):e49455. [PudMed:23166675] in_silico
 
in_silico This literature contains bioinformatics investigation