SecReT6
I. Summary
SecReT6 ID364 insolico
StrainCronobacter turicensis z3032
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013282
Location2019540..2059645
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111401101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CTU_19230 (betT)2015084..2017114 [+], 2031260597715choline transport protein BetT 
2CTU_192402017174..2017839 [+], 666260597716hypothetical protein 
3CTU_192502018000..2018131 [+], 132260597717hypothetical protein 
4CTU_192602018131..2018832 [+], 702260597718hypothetical protein 
5CTU_192702018942..2019058 [+], 117260597719hypothetical protein 
6CTU_192802019540..2020037 [+], 498260597720hypothetical protein  TssB
7CTU_192902020072..2021613 [+], 1542260597721hypothetical protein  TssC
8CTU_193002021628..2022977 [+], 1350260597722hypothetical protein  TssK
9CTU_193102022974..2023660 [+], 687260597723hypothetical protein  TssL
10CTU_193202023760..2025322 [+], 1563260597724hypothetical protein  TagL
11CTU_193302025337..2025828 [+], 492260597725hypothetical protein  TssD
12CTU_19340 (clpV1)2026089..2028779 [+], 2691260597726protein clpV1  TssH
13CTU_193502028772..2031129 [+], 2358260597727hypothetical protein  TssI
14CTU_193602031143..2033344 [+], 2202260597728hypothetical protein 
15CTU_193702033395..2033928 [+], 534260597729hypothetical protein 
16CTU_193802034395..2035507 [+], 1113260597730hypothetical protein  TssI
17CTU_193902035510..2036067 [+], 558260597731hypothetical protein 
18CTU_194002036078..2038741 [+], 2664260597732hypothetical protein 
19CTU_194102039434..2039625 [+], 192260597733hypothetical protein 
20CTU_194202039700..2039864 [+], 165260597734hypothetical protein 
21CTU_194302039900..2040283 [+], 384260597735hypothetical protein 
22CTU_194402040828..2043080 [+], 2253260597736hypothetical protein 
23CTU_194502043091..2043618 [+], 528260597737hypothetical protein 
24CTU_194602043628..2044035 [+], 408260597738hypothetical protein 
25CTU_194702044260..2044790 [+], 531260597739hypothetical protein 
26CTU_194802044968..2047196 [+], 2229260597740hypothetical protein 
27CTU_194902047358..2047531 [+], 174260597741hypothetical protein 
28CTU_195002048349..2048687 [+], 339260597742hypothetical protein  TssI
29CTU_195102048926..2049189 [+], 264260597743hypothetical protein  PAAR
30CTU_195202049192..2050400 [+], 1209260597744hypothetical protein 
31CTU_195302050474..2053785 [+], 3312260597745hypothetical protein  TssM
32CTU_195402053943..2055733 [+], 1791260597746hypothetical protein  TssF
33CTU_195502055697..2056779 [+], 1083260597747hypothetical protein  TssG
34CTU_195602056805..2057326 [+], 522260597748hypothetical protein  TssJ
35CTU_195702057330..2059645 [+], 2316260597749hypothetical protein  TssI
36CTU_195802059647..2060201 [+], 555260597750hypothetical protein 
37CTU_195902060304..2060423 [+], 120260597751hypothetical protein 
38CTU_196002060453..2061475 [+], 1023260597752hypothetical protein 
39CTU_196102061515..2062144 [+], 630260597753hypothetical protein 
40CTU_196202062199..2062945 [+], 747260597754hypothetical protein 
41CTU_196302063159..2063287 [+], 129260597755hypothetical protein 
42CTU_196402063291..2064451 [+], 1161260597756hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CTU_193302025337..2025828 [+], 492260597725hypothetical protein EC042_4529

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Proteins        Genes
N/A
(1) Franco AA et al. (2011). Characterization of putative virulence genes on the related RepFIB plasmids harbored by Cronobacter spp. Appl Environ Microbiol. 77(10):3255-67. [PudMed:21421789] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation