SecReT6
I. Summary
SecReT6 ID366 insolico
StrainEscherichia coli O103:H2 str. 12009
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013353
Location3415188..3441852
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECO103_3353 (csdA)3410370..3411575 [+], 1206260845456cysteine sulfinate desulfinase CsdA 
2ECO103_3354 (ygdK)3411575..3412018 [+], 444260845457Fe-S metabolism protein 
3ECO103_3355 (ygdL)3412069..3412875 [-], 807260845458hypothetical protein 
4ECO103_3356 (mltA)3412952..3414049 [-], 1098260845459membrane-bound lytic murein transglycosylase A 
5ECO103_33573415188..3415697 [+], 510260845460hypothetical protein  TssB
6ECO103_33583415746..3417284 [+], 1539260845461hypothetical protein  TssC
7ECO103_33593417302..3418639 [+], 1338260845462hypothetical protein  TssK
8ECO103_33603418636..3419301 [+], 666260845463hypothetical protein  TssL
9ECO103_33613419314..3420966 [+], 1653260845464outer membrane lipoprotein  TagL
10ECO103_33623421024..3421515 [+], 492260845465Hcp-like protein  TssD
11ECO103_33633421706..3424360 [+], 2655260845466ATP-dependent Clp proteinase ATP-binding chain  TssH
12ECO103_33643424372..3426879 [+], 2508260845467hypothetical protein  TssI
13ECO103_33653426901..3427494 [+], 594260845468hypothetical protein 
14ECO103_33663427598..3428047 [+], 450260845469hypothetical protein 
15ECO103_33673428125..3429339 [+], 1215260845470hypothetical protein 
16ECO103_33683429396..3432722 [+], 3327260845471hypothetical protein  TssM
17ECO103_33693432715..3434325 [+], 1611260845472hypothetical protein  TssA
18ECO103_33703434325..3435749 [+], 1425260845473hypothetical protein  PAAR
19ECO103_33713436724..3438484 [+], 1761260845474hypothetical protein  TssF
20ECO103_33723438448..3439527 [+], 1080260845475hypothetical protein  TssG
21ECO103_33733439508..3440044 [+], 537260845476hypothetical protein  TssJ
22ECO103_33743440048..3440476 [+], 429260845477hypothetical protein  TssE
23ECO103_33753440476..3441852 [+], 1377260845478hypothetical protein  TssA
24ECO103_3376 (amiC)3442811..3444064 [-], 1254260845479N-acetylmuramoyl-L-alanine amidase 
25ECO103_3377 (argA)3444296..3445627 [+], 1332260845480fused acetylglutamate kinase homolog (inactive)/amino acid N-acetyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECO103_33623421024..3421515 [+], 492260845465Hcp-like protein EC042_4529

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Proteins        Genes
N/A
N/A