SecReT6
I. Summary
SecReT6 ID368 insolico
StrainPectobacterium wasabiae WPP163
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013421
Location1157817..1178158
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101021111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Pecwa_10661154424..1154930 [-], 507261820383N-acetyltransferase GCN5 
2Pecwa_10671155027..1155746 [-], 720261820384hypothetical protein 
3Pecwa_10701157817..1158320 [+], 504261820385hypothetical protein  TssB
4Pecwa_10711158353..1159831 [+], 1479261820386hypothetical protein  TssC
5Pecwa_10721159837..1160268 [+], 432261820387type VI secretion system lysozyme-like protein  TssE
6Pecwa_10731160271..1162037 [+], 1767261820388hypothetical protein  TssF
7Pecwa_10741162001..1162999 [+], 999261820389hypothetical protein  TssG
8Pecwa_10751163002..1164222 [+], 1221261820390FHA domain-containing protein  Fha
9Pecwa_10761164219..1164743 [+], 525261820391type VI secretion lipoprotein  TssJ
10Pecwa_10771164746..1166083 [+], 1338261820392hypothetical protein  TssK
11Pecwa_10781166099..1166875 [+], 777261820393DotU family type IV / VI secretion system protein  TssL
12Pecwa_10791166889..1169486 [+], 2598261820394type VI secretion ATPase, ClpV1 family  TssH
13Pecwa_10801169489..1171027 [+], 1539261820395sigma-54 interacting domain-containing protein 
14Pecwa_10811171027..1171587 [+], 561261820396type VI secretion-associated protein 
15Pecwa_10821171599..1173026 [+], 1428261820397type VI secretion-associated protein  TssA
16Pecwa_10831173051..1176548 [+], 3498261820398hypothetical protein  TssM
17Pecwa_10841176722..1178158 [+], 1437261820399ImpA domain-containing protein  TssA
18Pecwa_10851178190..1179542 [+], 1353261820400Sel1 domain-containing protein repeat-containing protein 
19Pecwa_10861179911..1180231 [+], 321261820401hypothetical protein 
20Pecwa_10871180299..1180625 [+], 327261820402hypothetical protein 
21Pecwa_10881180728..1181192 [+], 465261820403hypothetical protein 
22Pecwa_10891181238..1181684 [+], 447261820404hypothetical protein 
23Pecwa_10901181735..1182106 [+], 372261820405hypothetical protein 
24Pecwa_10911182145..1182615 [+], 471261820406hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA4275 , ECA2866, ECA3427, ECA2866, ECA2866, ECA3427, Dda3937_02773, ECA2866, ECA3427, Dda3937_01758

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Pecwa_006165245..65763 [-], 519261819430type VI secretion system effector ECA4275
2Pecwa_0344382906..383424 [+], 519261819698type VI secretion system effector ECA2866
3Pecwa_0345383546..385405 [+], 1860261819699ImpA family type VI secretion-associated protein ECA3427
4Pecwa_0533570784..571158 [-], 375261819863type VI secretion system effector ECA2866
5Pecwa_0647687024..687542 [+], 519261819972type VI secretion system effector ECA2866
6Pecwa_0648687663..689492 [+], 1830261819973ImpA family type VI secretion-associated protein ECA3427
7Pecwa_0650689957..694225 [+], 4269261819975hypothetical protein Dda3937_02773
8Pecwa_16061741995..1742513 [+], 519261820897type VI secretion system effector ECA2866
9Pecwa_16071742607..1744457 [+], 1851261820898ImpA family type VI secretion-associated protein ECA3427
10Pecwa_16091744928..1749271 [+], 4344261820900hypothetical protein Dda3937_01758

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Proteins        Genes
N/A
N/A