SecReT6
I. Summary
SecReT6 ID369 insolico
StrainPectobacterium wasabiae WPP163
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013421
Location2639273..2675013
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Pecwa_24352635255..2635998 [-], 744261821697lipoprotein 
2Pecwa_24362636061..2636822 [-], 762261821698ankyrin 
3Pecwa_24372636834..2638126 [-], 1293261821699hypothetical protein 
4Pecwa_24382638119..2639270 [-], 1152261821700hypothetical protein 
5Pecwa_24392639273..2641411 [-], 2139261821701ImpA family type VI secretion-associated protein  TssI
6Pecwa_24402641458..2641850 [-], 393261821702hypothetical protein 
7Pecwa_24412641860..2642465 [-], 606261821703hypothetical protein 
8Pecwa_24422642478..2643548 [-], 1071261821704pentapeptide repeat-containing protein 
9Pecwa_24432643545..2646085 [-], 2541261821705hypothetical protein 
10Pecwa_24442646186..2646569 [-], 384261821706hypothetical protein 
11Pecwa_24452646854..2647228 [-], 375261821707hypothetical protein 
12Pecwa_24462647530..2647910 [-], 381261821708hypothetical protein 
13Pecwa_24472647919..2650126 [-], 2208261821709ImpA family type VI secretion-associated protein  TssI
14Pecwa_24482650144..2651574 [-], 1431261821710serine/threonine protein kinase 
15Pecwa_24492651604..2654213 [-], 2610261821711type VI secretion ATPase, ClpV1 family  TssH
16Pecwa_24502654269..2655318 [-], 1050261821712hypothetical protein  TssG
17Pecwa_24512655315..2657189 [-], 1875261821713hypothetical protein  TssF
18Pecwa_24522657192..2657767 [-], 576261821714type VI secretion system lysozyme-like protein  TssE
19Pecwa_24532657757..2658584 [-], 828261821715virulence protein SciE type  TagJ
20Pecwa_24542658601..2659578 [-], 978261821716hypothetical protein 
21Pecwa_24552659589..2660380 [-], 792261821717protein serine/threonine phosphatase 
22Pecwa_24562660377..2662191 [-], 1815261821718FHA domain-containing protein  Fha
23Pecwa_24572662451..2663110 [-], 660261821719hypothetical protein 
24Pecwa_24582663127..2663573 [-], 447261821720hypothetical protein 
25Pecwa_24592663628..2664110 [-], 483261821721hypothetical protein  TssD
26Pecwa_24602664419..2665918 [-], 1500261821722hypothetical protein  TssC
27Pecwa_24612665918..2666448 [-], 531261821723hypothetical protein  TssB
28Pecwa_24622666528..2667547 [-], 1020261821724type VI secretion-associated protein, ImpA family  TssA
29Pecwa_24632667559..2668266 [-], 708261821725type VI secretion-associated protein 
30Pecwa_24642668281..2671904 [-], 3624261821726hypothetical protein  TssM
31Pecwa_24652671908..2673149 [-], 1242261821727hypothetical protein  TssL
32Pecwa_24662673169..2674509 [-], 1341261821728hypothetical protein  TssK
33Pecwa_24672674519..2675013 [-], 495261821729type VI secretion lipoprotein  TssJ
34Pecwa_24682675037..2675618 [-], 582261821730hypothetical protein 
35Pecwa_24692676635..2677696 [-], 1062261821731hypothetical protein 
36Pecwa_24702677940..2678665 [+], 726261821732ABC transporter 
37Pecwa_24712678665..2679555 [+], 891261821733ABC transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , ECA2866, ECA3427, ECA2866, ECA3427

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Pecwa_24592663628..2664110 [-], 483261821721hypothetical protein SMA2263
2Pecwa_26972954716..2955234 [-], 519261821953type VI secretion system effector ECA2866
3Pecwa_34543795317..3797284 [-], 1968261822692ImpA family type VI secretion-associated protein ECA3427
4Pecwa_42564702651..4703169 [+], 519261823481type VI secretion system effector ECA2866
5Pecwa_42574703358..4705190 [+], 1833261823482ImpA family type VI secretion-associated protein ECA3427

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Proteins        Genes
N/A
N/A