SecReT6
I. Summary
SecReT6 ID370 insolico
StrainVibrio sp. Ex25
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_013457
Location10374..32419
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VEA_0000095715..5906 [-], 192262395308hypothetical protein 
2VEA_0000105941..6276 [-], 336262395309HPT domain containing protein 
3VEA_0000116706..8856 [-], 2151262395310serine/threonine protein kinase 
4VEA_0000129169..10362 [+], 1194262395311hypothetical protein  Fha
5VEA_00001310374..10829 [+], 456262395312type VI secretion lipoprotein/VasD  TssJ
6VEA_00001410887..12176 [+], 1290262395313hypothetical protein  TssK
7VEA_00001512188..13480 [+], 1293262395314Flagellar motor rotation protein MotB  TssL
8VEA_00001613497..17015 [+], 3519262395315IcmF-related protein  TssM
9VEA_00001716997..17692 [+], 696262395316protein phosphatase ImpM 
10VEA_00001817702..18496 [+], 795262395317serine/threonine protein phosphatase 
11VEA_00001918489..19607 [+], 1119262395318hypothetical protein  TssA
12VEA_00002019623..20153 [+], 531262395319hypothetical protein  TssB
13VEA_00002120153..21646 [+], 1494262395320hypothetical protein  TssC
14VEA_00002221711..23210 [+], 1500262395321hypothetical protein  TssC
15VEA_00002323221..24015 [+], 795262395322protein of avirulence locus ImpE  TagJ
16VEA_00002424023..24487 [+], 465262395323hypothetical protein  TssE
17VEA_00002524484..26307 [+], 1824262395324protein ImpG/VasA  TssF
18VEA_00002626304..27269 [+], 966262395325hypothetical protein  TssG
19VEA_00002727280..29847 [+], 2568262395326ClpB protein  TssH
20VEA_00002830056..30535 [+], 480262395327hemolysin-coregulated protein  TssD
21VEA_00002930584..32419 [+], 1836262395328hypothetical protein  TssI
22VEA_00003032431..32721 [+], 291262395329hypothetical protein  PAAR
23VEA_00003132722..33561 [+], 840262395330NAD/NADP transhydrogenase beta subunit 
24VEA_00003233886..35019 [+], 1134262395331exonuclease SbcD 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VEA_00002830056..30535 [+], 480262395327hemolysin-coregulated protein VPA1027

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Proteins        Genes
N/A
N/A