SecReT6
I. Summary
SecReT6 ID371 insolico
StrainVibrio sp. Ex25
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_013457
Location488136..517330
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VEA_000426483156..483485 [-], 330262395726hypothetical protein 
2VEA_000427484286..486517 [-], 2232262395727hypothetical protein 
3VEA_000428486530..487987 [-], 1458262395728hypothetical protein  PAAR
4VEA_000429488136..488927 [-], 792262395729ImpK/VasF outer membrane protein  TssL
5VEA_000430488924..490249 [-], 1326262395730hypothetical protein  TssK
6VEA_000431490261..490761 [-], 501262395731type VI secretion lipoprotein/VasD  TssJ
7VEA_000432490754..492247 [-], 1494262395732hypothetical protein  Fha
8VEA_000433492257..492856 [-], 600262395733hypothetical protein 
9VEA_000434493395..494708 [+], 1314262395734hypothetical protein  TssA
10VEA_000435494736..498128 [+], 3393262395735IcmF-related protein  TssM
11VEA_000436498157..498609 [+], 453262395736transcriptional regulator 
12VEA_000437498664..499662 [-], 999262395737hypothetical protein  TssG
13VEA_000438499659..501407 [-], 1749262395738protein ImpG/VasA  TssF
14VEA_000439501418..501828 [-], 411262395739hypothetical protein  TssE
15VEA_000440501890..503365 [-], 1476262395740hypothetical protein  TssC
16VEA_000441503374..503880 [-], 507262395741hypothetical protein  TssB
17VEA_000442503907..505475 [-], 1569262395742hypothetical protein  TssA
18VEA_000443505462..507462 [-], 2001262395743serine/threonine protein kinase 
19VEA_000444507700..508644 [-], 945262395744hypothetical protein 
20VEA_000445508637..509629 [-], 993262395745pentapeptide repeat family protein 
21VEA_000446509610..510929 [-], 1320262395746hypothetical protein 
22VEA_000447511041..511439 [-], 399262395747hypothetical protein 
23VEA_000448511526..513604 [-], 2079262395748VgrG protein  TssI
24VEA_000449513677..514195 [-], 519262395749Hcp protein  TssD
25VEA_000450515267..517330 [+], 2064262395750ClpB protein  TssH
26VEA_000451517317..518948 [+], 1632262395751transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VEPGS_0021

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VEA_000449513677..514195 [-], 519262395749Hcp protein VEPGS_0021

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Proteins        Genes
N/A
N/A