SecReT6
I. Summary
SecReT6 ID376 insolico
StrainPirellula staleyi DSM 6068
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013720
Location2313772..2333035
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Psta_18222311268..2312542 [-], 1275283779602aromatic hydrocarbon degradation membrane protein 
2Psta_18242313772..2315448 [-], 1677283779603hypothetical protein  TssM
3Psta_18252315567..2316199 [-], 633283779604hypothetical protein  TssL
4Psta_18262316312..2317784 [-], 1473283779605type VI secretion protein  TssK
5Psta_18272317824..2318582 [-], 759283779606hypothetical protein 
6Psta_18282318618..2319922 [+], 1305283779607hypothetical protein 
7Psta_18292320298..2320477 [-], 180283779608hypothetical protein 
8Psta_18302320612..2321706 [+], 1095283779609type VI secretion-associated protein, ImpA family  TssA
9Psta_18312322101..2322613 [+], 513283779610type VI secretion protein  TssB
10Psta_18322322701..2324200 [+], 1500283779611type VI secretion protein EvpB  TssC
11Psta_18332324881..2325381 [+], 501283779612hypothetical protein  TssD
12Psta_18342325729..2326658 [+], 930283779613virulence protein SciE type  TagJ
13Psta_18352326651..2327154 [+], 504283779614type VI secretion system lysozyme-like protein  TssE
14Psta_18362327220..2329097 [+], 1878283779615type VI secretion protein  TssF
15Psta_18372329061..2330098 [+], 1038283779616type VI secretion protein  TssG
16Psta_18382330288..2333035 [+], 2748283779617type VI secretion ATPase, ClpV1 family  TssH
17Psta_18392333222..2334301 [+], 1080283779618hypothetical protein 
18Psta_18402334523..2335077 [-], 555283779619hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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