SecReT6
I. Summary
SecReT6 ID378 insolico
StrainAzospirillum sp. B510
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013854
Location2028331..2056809
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZL_0177302023418..2024275 [-], 858288958614hypothetical protein 
2AZL_0177402024286..2025353 [-], 1068288958615ABC-type transport system periplasmic protein 
3AZL_0177502025359..2027530 [-], 2172288958616major facilitator superfamily permease 
4AZL_0177602027527..2028300 [-], 774288958617hypothetical protein 
5AZL_0177702028331..2029665 [-], 1335288958618hypothetical protein  TssK
6AZL_0177802029710..2030876 [-], 1167288958619FHA domain-containing protein  Fha
7AZL_0177902030881..2031465 [-], 585288958620hypothetical protein 
8AZL_0178002031526..2033646 [-], 2121288958621hypothetical protein  TssI
9AZL_0178102033769..2034245 [-], 477288958622hypothetical protein  TssD
10AZL_0178202034416..2037103 [-], 2688288958623chaperone protein  TssH
11AZL_0178302037294..2038361 [-], 1068288958624hypothetical protein 
12AZL_0178402038366..2038749 [-], 384288958625hypothetical protein  PAAR
13AZL_0178502038769..2039080 [-], 312288958626hypothetical protein 
14AZL_0178602039317..2040450 [+], 1134288958627impA-related N-terminal protein  TssA
15AZL_0178702040495..2041001 [+], 507288958628hypothetical protein  TssB
16AZL_0178802041006..2042499 [+], 1494288958629hypothetical protein  TssC
17AZL_0178902042521..2044077 [+], 1557288958630hypothetical protein  TssC
18AZL_0179002044115..2044912 [+], 798288958631SciE type virulence protein  TagJ
19AZL_0179102045000..2045476 [+], 477288958632hypothetical protein  TssE
20AZL_0179202045469..2047301 [+], 1833288958633hypothetical protein  TssF
21AZL_0179302047265..2048350 [+], 1086288958634hypothetical protein  TssG
22AZL_0179402048392..2049933 [+], 1542288958635methylase 
23AZL_0179502049971..2050798 [-], 828288958636hypothetical protein 
24AZL_0179602050988..2051614 [+], 627288958637hypothetical protein  TssJ
25AZL_0179702051611..2053119 [+], 1509288958638ompA-family protein  TssL
26AZL_0179802053123..2056809 [+], 3687288958639hypothetical protein  TssM
27AZL_0179902056791..2058836 [+], 2046288958640serine/threonine protein kinase 
28AZL_0180002058856..2059311 [+], 456288958641hypothetical protein 
29AZL_0180102059663..2059881 [+], 219288958642hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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