SecReT6
I. Summary
SecReT6 ID379 insolico
StrainAzospirillum sp. B510
Repliconplasmid pAB510a [Browse all T6SS(s) in this replicon]
AccessionNC_013855
Location178844..204990
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZL_a01530174515..175291 [-], 777288959888hypothetical protein 
2AZL_a01540175828..176841 [+], 1014288959889two-component response regulator 
3AZL_a01550176974..178041 [+], 1068288959890hypothetical protein 
4AZL_a01560178263..178847 [-], 585288959891hypothetical protein 
5AZL_a01570178844..179437 [-], 594288959892hypothetical protein  TssD
6AZL_a01580179445..180575 [-], 1131288959893impA domain protein  TssA
7AZL_a01590180606..184820 [-], 4215288959894hypothetical protein  TssM
8AZL_a01600184843..185601 [-], 759288959895hypothetical protein  TssL
9AZL_a01610185768..187111 [-], 1344288959896hypothetical protein  TssK
10AZL_a01620187139..187576 [-], 438288959897hypothetical protein 
11AZL_a01630187576..188385 [-], 810288959898hypothetical protein  SPOR
12AZL_a01640188636..189214 [-], 579288959899hypothetical protein  SPOR
13AZL_a01650189175..189774 [-], 600288959900hypothetical protein 
14AZL_a01660189771..191798 [-], 2028288959901serine phosphatase 
15AZL_a01670191795..193714 [-], 1920288959902hypothetical protein 
16AZL_a01680193718..194626 [-], 909288959903hypothetical protein 
17AZL_a01690195268..195984 [+], 717288959904hypothetical protein 
18AZL_a01700196189..196731 [+], 543288959905hypothetical protein  TssB
19AZL_a01710196778..198247 [+], 1470288959906hypothetical protein  TssC
20AZL_a01720198295..198804 [+], 510288959907hypothetical protein  TssD
21AZL_a01730198877..199434 [+], 558288959908hypothetical protein  TssE
22AZL_a01740199436..201232 [+], 1797288959909hypothetical protein  TssF
23AZL_a01750201196..202233 [+], 1038288959910hypothetical protein  TssG
24AZL_a01760202383..203465 [+], 1083288959911hypothetical protein  TssH
25AZL_a01770202897..204990 [+], 2094288959912hypothetical protein  TssI
26AZL_a01780204992..205693 [+], 702288959913hypothetical protein 
27AZL_a01790205712..206101 [-], 390288959914hypothetical protein 
28AZL_a01800206225..207382 [-], 1158288959915hypothetical protein 
29AZL_a01810208361..209005 [+], 645288959916coronamic acid synthetase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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