SecReT6
I. Summary
SecReT6 ID38 insolico
StrainVibrio vulnificus CMCP6
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_004460
Location454915..489055
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VV2_0416450819..451718 [-], 90027366854hypothetical protein 
2VV2_0419452116..452595 [-], 480326424230hypothetical protein 
3VV2_0420452756..453367 [-], 612326424231transposase 
4VV2_0421453447..453674 [-], 22827366858transposase 
5VV2_0422453809..454318 [-], 51027366859hypothetical protein 
6VV2_0423454315..454470 [-], 15627366860hypothetical protein 
7VV2_0424454476..454859 [-], 38427366861helicase subunit of the DNA excision repair complex 
8VV2_0425454907..459340 [-], 443427366862Rhs family protein 
9VV2_0426459341..460249 [-], 90927366863NAD/NADP transhydrogenase subunit beta 
10VV2_0427460250..460540 [-], 29127366864hypothetical protein  PAAR
11VV2_0428460550..462385 [-], 1836326424232hypothetical protein  TssI
12VV2_0429462440..462919 [-], 48027366866hemolysin-coregulated protein  TssD
13VV2_0430 (clpV)463135..465699 [-], 256527366867type VI secretion ATPase, ClpV1 family  TssH
14VV2_0431465713..466681 [-], 96927366868hypothetical protein  TssG
15VV2_0432466678..468504 [-], 182727366869protein ImpG/VasA  TssF
16VV2_0433468501..468974 [-], 47427366870hypothetical protein  TssE
17VV2_0434468971..469774 [-], 80427366871protein of avirulence locus ImpE  TagJ
18VV2_0435469785..471278 [-], 149427366872hypothetical protein  TssC
19VV2_0436471323..472816 [-], 149427366873hypothetical protein  TssC
20VV2_0437472828..473340 [-], 51327366874hypothetical protein  TssB
21VV2_0438473357..474490 [-], 113427366875hypothetical protein  TssA
22VV2_0439474490..475323 [-], 83427366876serine/threonine protein phosphatase 
23VV2_0440475295..475990 [-], 69627366877protein phosphatase ImpM 
24VV2_0441475972..479496 [-], 3525326424233IcmF-like protein  TssM
25VV2_0442479474..480802 [-], 132927366879flagellar motor protein  TssL
26VV2_0443480811..482133 [-], 1323326424234hypothetical protein  TssK
27VV2_0444482157..482612 [-], 45627366881Type VI secretion lipoprotein/VasD  TssJ
28VV2_0445482613..483830 [-], 1218326424235hypothetical protein  Fha
29VV2_0446484146..486314 [+], 2169326424236serine/threonine protein kinase 
30VV2_0447486378..486995 [-], 61827366884glutathione S-transferase 
31VV2_0448487096..487683 [+], 58827366885transcriptional regulator 
32VV2_0449487680..488078 [+], 39927366886DNA-binding protein 
33VV2_0450488082..488345 [-], 26427366887hypothetical protein 
34VV2_0451488345..488575 [-], 23127366888hypothetical protein 
35VV2_0452488703..489047 [-], 34527366889Type III effector HopPmaJ 
36VV2_0453489309..490907 [+], 1599326424237signal transduction protein 
37VV2_0454491007..491339 [-], 33327366891pterin-4-alpha-carbinolamine dehydratase 
38VV2_0455 (phhA)491332..492123 [-], 79227366892phenylalanine 4-monooxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VV2_0429462440..462919 [-], 48027366866hemolysin-coregulated protein VPA1027

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation