SecReT6
I. Summary
SecReT6 ID380 insolico
StrainAzospirillum sp. B510
Repliconplasmid pAB510a [Browse all T6SS(s) in this replicon]
AccessionNC_013855
Location618244..644978
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZL_a04980613582..615996 [-], 2415288960233ABC transporter 
2AZL_a04990616004..618259 [-], 2256288960234ABC transporter 
3AZL_a05000618244..619881 [+], 1638288960235impA domain protein  TssA
4AZL_a05010619903..620409 [+], 507288960236hypothetical protein  TssB
5AZL_a05020620456..621940 [+], 1485288960237hypothetical protein  TssC
6AZL_a05030621996..622418 [+], 423288960238hypothetical protein  TssE
7AZL_a05040622429..624186 [+], 1758288960239hypothetical protein  TssF
8AZL_a05050624120..625223 [+], 1104288960240hypothetical protein  TssG
9AZL_a05060625226..625570 [-], 345288960241anti-sigma factor antagonist 
10AZL_a05070625691..626209 [-], 519288960242hypothetical protein  TssD
11AZL_a05080626292..627353 [-], 1062288960243serine/threonine protein kinase 
12AZL_a05090627350..628102 [-], 753288960244protein phosphatase 
13AZL_a05100628099..631734 [-], 3636288960245hypothetical protein  TssM
14AZL_a05110631731..632711 [-], 981288960246hypothetical protein  TssL
15AZL_a05120632708..634039 [-], 1332288960247hypothetical protein  TssK
16AZL_a05130634097..634624 [-], 528288960248hypothetical protein  TssJ
17AZL_a05140634621..635637 [-], 1017288960249FHA domain-containing protein  Fha
18AZL_a05150635883..639890 [+], 4008288960250hypothetical protein  TssI
19AZL_a05160639923..642223 [+], 2301288960251hypothetical protein  PAAR
20AZL_a05170642255..644978 [+], 2724288960252chaperone protein  TssH
21AZL_a05180 (ada)645265..646422 [+], 1158288960253methylated-DNA-[protein]-cysteine S-methyltransferase 
22AZL_a05190646371..647189 [-], 819288960254ABC transporter 
23AZL_a05200647186..647950 [-], 765288960255antibiotic transport system ATP-binding protein 
24AZL_a05210647996..648973 [-], 978288960256beta-propeller repeat-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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