SecReT6
I. Summary
SecReT6 ID382 insolico
StrainXenorhabdus bovienii SS-2004
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013892
Location2053604..2079234
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XBJ1_20862049094..2049369 [-], 276290475101hypothetical protein 
2XBJ1_20872049240..2049680 [+], 441290475102N-acetyltransferase GCN5 
3XBJ1_20882049845..2050012 [+], 168290475103hypothetical protein 
4XBJ1_20892049932..2050144 [-], 213290475104hypothetical protein 
5XBJ1_20902050346..2050648 [-], 303290475105insertion element iso-IS1n protein insB (fragment) 
6XBJ1_20912050765..2051040 [-], 276290475106insertion element iso-IS1N protein insA 
7XBJ1_20922051078..2051299 [-], 222290475107hypothetical protein 
8XBJ1_20932051512..2051676 [+], 165290475108transposase 
9XBJ1_20942051865..2052560 [+], 696290475109transposase 
10XBJ1_20952052635..2053363 [-], 729290475110hypothetical protein 
11XBJ1_20962053604..2056237 [-], 2634290475111ClpA/B-type chaperone  TssH
12XBJ1_20972056281..2057357 [-], 1077290475112hypothetical protein  TssG
13XBJ1_20982057415..2059289 [-], 1875290475113hypothetical protein  TssF
14XBJ1_20992059309..2059863 [-], 555290475114hypothetical protein  TssE
15XBJ1_21002059923..2061476 [-], 1554290475115hypothetical protein  Fha
16XBJ1_21012061568..2062071 [-], 504290475116secretion system effector of SST VI cluster (Hcp family)  TssD
17XBJ1_21022062237..2063739 [-], 1503290475117hypothetical protein  TssC
18XBJ1_21032063743..2064294 [-], 552290475118hypothetical protein  TssB
19XBJ1_21042064485..2065540 [-], 1056290475119hypothetical protein  TssA
20XBJ1_21052065703..2069218 [-], 3516290475120hypothetical protein  TssM
21XBJ1_21062069231..2070442 [-], 1212290475121hypothetical protein  TssL
22XBJ1_21072070486..2071829 [-], 1344290475122hypothetical protein  TssK
23XBJ1_21082071856..2072365 [-], 510290475123hypothetical protein  TssJ
24XBJ1_21092072376..2072531 [+], 156290475124hypothetical protein 
25XBJ1_21102072520..2072921 [-], 402290475125hypothetical protein 
26XBJ1_21112072942..2073604 [-], 663290475126hypothetical protein 
27XBJ1_21122073619..2074692 [-], 1074290475127hypothetical protein 
28XBJ1_21132074689..2077283 [-], 2595290475128exported protein (pentapeptide repaet protein) 
29XBJ1_21142077318..2079234 [-], 1917290475129hypothetical protein  TssI
30XBJ1_21152079777..2079908 [+], 132290475130transposase 
31XBJ1_21162080261..2080377 [+], 117290475131transposase 
32XBJ1_21192081726..2082508 [+], 783290475132Gramicidin S biosynthesis protein grsT 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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