SecReT6
I. Summary
SecReT6 ID384 insolico
StrainPantoea ananatis LMG 20103
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013956
Location2617516..2646006
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PANA_23492615631..2616071 [-], 441291617902hypothetical Protein 
2PANA_23502616084..2616719 [-], 636291617903hypothetical Protein 
3PANA_23512617023..2617616 [-], 594291617904hypothetical Protein 
4PANA_23522617516..2620086 [-], 2571291617905hypothetical Protein  TssI
5PANA_2353 (pknA)2620092..2621603 [-], 1512291617906PknA 
6PANA_2354 (clpV)2621585..2624194 [-], 2610291617907ClpV  TssH
7PANA_23552624248..2625297 [-], 1050291617908hypothetical Protein  TssG
8PANA_23562625294..2627171 [-], 1878291617909hypothetical Protein  TssF
9PANA_23572627174..2627749 [-], 576291617910hypothetical Protein  TssE
10PANA_23582627739..2628566 [-], 828291617911hypothetical Protein  TagJ
11PANA_23592628583..2629638 [-], 1056291617912hypothetical Protein 
12PANA_2360 (pppA)2629607..2630398 [-], 792291617913PppA 
13PANA_23612630395..2632293 [-], 1899291617914hypothetical Protein  Fha
14PANA_23622632908..2633309 [-], 402291617915hypothetical Protein 
15PANA_23632633322..2634197 [-], 876291617916hypothetical Protein 
16PANA_23642634321..2634803 [-], 483291617917hypothetical Protein  TssD
17PANA_23652635382..2636881 [-], 1500291617918hypothetical Protein  TssC
18PANA_23662636881..2637423 [-], 543291617919hypothetical Protein  TssB
19PANA_23672637492..2638589 [-], 1098291617920hypothetical Protein  TssA
20PANA_23682638525..2639238 [-], 714291617921hypothetical Protein 
21PANA_23692639253..2642879 [-], 3627291617922hypothetical Protein  TssM
22PANA_2370 (ytxE)2642883..2644124 [-], 1242291617923hypothetical protein  TssL
23PANA_23712644141..2645487 [-], 1347291617924hypothetical Protein  TssK
24PANA_23722645503..2646006 [-], 504291617925hypothetical Protein  TssJ
25PANA_23732646030..2646668 [-], 639291617926hypothetical Protein 
26PANA_2374 (yeeO)2647741..2649180 [-], 1440291617927hypothetical protein 
27PANA_2375 (amn)2649551..2651005 [+], 1455291617928Amn 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECL_03140 , ECL_01567, SMA2263, SMA3456, SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PANA_1076(rhsD)1226493..1230686 [-], 4194291616629RhsD ECL_03140
2PANA_2348(rhsD)2611524..2615627 [-], 4104291617901RhsD ECL_01567
3PANA_23642634321..2634803 [-], 483291617917hypothetical Protein SMA2263
4PANA_24462727939..2728421 [-], 483291617999hypothetical Protein SMA3456
5PANA_24472728452..2728934 [-], 483291618000hypothetical Protein SMA2263

Download FASTA format files
Proteins        Genes
N/A
(1) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407] in_silico
 
in_silico This literature contains bioinformatics investigation