SecReT6
I. Summary
SecReT6 ID386 insolico
StrainErwinia amylovora CFBP1430
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013961
Location3102718..3135195
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EAMY_3000 (vgrG1)3102718..3104652 [-], 1935292489467type VI secretion system effector protein VgrG  TssI
2EAMY_30013104926..3105993 [-], 1068292489468hypothetical protein 
3EAMY_30023106475..3107542 [-], 1068292489469flagellar L-ring protein  PAAR
4EAMY_3003 (vgrG3)3107565..3109529 [-], 1965292489470type VI secretion system effector protein VgrG  TssI
5EAMY_30043109576..3110982 [-], 1407292489471serine/threonine protein kinase 
6EAMY_3005 (clpV1)3111012..3113627 [-], 2616292489472type VI secretion system core protein ATPase  TssH
7EAMY_30063113724..3114788 [-], 1065292489473type VI secretion system core protein  TssG
8EAMY_30073114785..3116659 [-], 1875292489474type VI secretion system core protein  TssF
9EAMY_30083116678..3117244 [-], 567292489475type VI secretion system core protein  TssE
10EAMY_30093117241..3118062 [-], 822292489476type VI secretion system-associated protein  TagJ
11EAMY_30103118072..3119079 [-], 1008292489477type VI secretion system-associated protein 
12EAMY_30113119098..3119892 [-], 795292489478type VI secretion system Serine/threonine protein phosphatase 
13EAMY_30123119889..3121730 [-], 1842292489479type VI secretion system core protein  Fha
14EAMY_30133121734..3121871 [+], 138292489480hypothetical protein 
15EAMY_30143121849..3122217 [-], 369292489481type VI secretion system-associated protein 
16EAMY_30153122343..3122750 [-], 408292489482type VI secretion system-associated protein 
17EAMY_30163122787..3122891 [+], 105292489483hypothetical protein 
18EAMY_30173122888..3123256 [-], 369292489484type VI secretion system-associated protein 
19EAMY_30183123241..3123720 [-], 480292489485type VI secretion system-associated protein  Ssp2 (e)
20EAMY_30193123799..3124281 [-], 483292489486type VI secretion system effector protein hcp  TssD
21EAMY_30203124559..3126058 [-], 1500292489487type VI secretion system core protein  TssC
22EAMY_30213126062..3126598 [-], 537292489488type VI secretion system core protein  TssB
23EAMY_30223126661..3127680 [-], 1020292489489type VI secretion system core protein  TssA
24EAMY_30233127698..3128411 [-], 714292489490hypothetical protein 
25EAMY_30243128425..3132057 [-], 3633292489491type VI secretion system core protein  TssM
26EAMY_30253132061..3133302 [-], 1242292489492type VI secretion system core protein  TssL
27EAMY_30263133320..3134663 [-], 1344292489493type VI secretion system core protein  TssK
28EAMY_30273134683..3135195 [-], 513292489494type VI secretion system core protein  TssJ
29EAMY_30283135220..3135723 [-], 504292489495hypothetical protein 
30EAMY_30293135837..3135944 [+], 108292489496hypothetical protein 
31EAMY_3030 (yjjG)3136698..3137378 [-], 6812924894975'-nucleotidase 
32EAMY_3031 (rimI)3137393..3137875 [-], 483292489498acyltransferase 
33EAMY_3032 (holD)3137796..3138218 [-], 423292489499DNA polymerase III subunit psi 
34EAMY_3033 (rsmC)3138316..3139416 [+], 1101292489500ribosomal RNA small subunit methyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2264 , SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EAMY_30183123241..3123720 [-], 480292489485type VI secretion system-associated protein SMA2264
2EAMY_30193123799..3124281 [-], 483292489486type VI secretion system effector protein hcp SMA2263

Download FASTA format files
Proteins        Genes
N/A
(1) Mann RA et al. (2013). Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core. PLoS One. 8(2):e55644. [PudMed:23409014] in_silico
(2) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407] in_silico
 
in_silico This literature contains bioinformatics investigation