SecReT6
I. Summary
SecReT6 ID388 insolico
StrainErwinia amylovora ATCC 49946
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013971
Location446034..479745
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111421111
ComponentTssGTssJTssKTssM
Number1211
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EAM_0367446034..446531 [+], 498292898093hypothetical protein  TssB
2EAM_0368446566..448113 [+], 1548292898094hypothetical protein  TssC
3EAM_0369448131..449480 [+], 1350292898095hypothetical protein  TssK
4EAM_0370449477..450154 [+], 678292898096membrane protein  TssL
5EAM_0371450154..451809 [+], 1656292898097outer membrane protein  TagL
6EAM_0372451842..452333 [+], 492292898098hypothetical protein  TssD
7EAM_0373 (clpB)452504..455164 [+], 2661292898099ATPase/chaperone  TssH
8EAM_0374455250..455459 [+], 210292898100hypothetical protein 
9EAM_0375455605..457962 [+], 2358292898101hypothetical protein  TssI
10EAM_0376458046..458576 [+], 531292898102hypothetical protein 
11EAM_0377458715..458984 [+], 270292898103hypothetical protein  PAAR
12EAM_0378458987..460195 [+], 1209292898104membrane protein 
13EAM_0379460188..463559 [+], 3372292898105membrane protein  TssM
14EAM_0380463556..465163 [+], 1608292898106hypothetical protein  TssA
15EAM_0381465318..467087 [+], 1770292898107hypothetical protein  TssF
16EAM_0382467051..468133 [+], 1083292898108hypothetical protein  TssG
17EAM_0383468159..468683 [+], 525292898109hypothetical protein  TssJ
18EAM_0384468688..471000 [+], 2313292898110hypothetical protein  TssI
19EAM_0385471002..471556 [+], 555292898111hypothetical protein 
20EAM_0386471556..472338 [+], 783292898112hypothetical protein 
21EAM_0387472460..472876 [+], 417292898113hypothetical protein 
22EAM_0388472932..473495 [+], 564292898114hypothetical protein 
23EAM_0389473540..474283 [+], 744292898115hypothetical protein 
24EAM_0390474387..474785 [+], 399292898116hypothetical protein  TssJ
25EAM_0391474817..475401 [+], 585292898117hypothetical protein  TssI
26EAM_0393475575..475964 [+], 390292898118hypothetical protein 
27EAM_0394476019..476195 [+], 177292898119hypothetical protein 
28EAM_0395476226..477116 [+], 891292898120hypothetical protein  TssI
29EAM_0396477131..477304 [+], 174292898121hypothetical protein 
30EAM_0397477605..477799 [+], 195292898122hypothetical protein 
31EAM_0398477848..478300 [+], 453292898123hypothetical protein  TssE
32EAM_0399478345..479745 [+], 1401292898124hypothetical protein  TssA
33EAM_0401481916..483082 [+], 1167292898125hypothetical protein 
34EAM_0402483968..484549 [+], 582292898126hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EAM_0372451842..452333 [+], 492292898098hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A