SecReT6
I. Summary
SecReT6 ID389 insolico
StrainErwinia amylovora ATCC 49946
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013971
Location636187..668664
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EAM_0566 (rsmC)631966..632994 [-], 1029292898288ribosomal RNA small subunit methyltransferase C 
2EAM_0567 (holD)633164..633586 [+], 423292898289DNA polymerase III subunit psi 
3EAM_0568 (rimI)633549..633989 [+], 441292898290ribosomal-protein-alanine acetyltransferase 
4EAM_0569634004..634684 [+], 6812928982915'-nucleotidase 
5EAM_0570634818..635105 [+], 288292898292hypothetical protein 
6EAM_0571635659..636162 [+], 504292898293lipoprotein 
7EAM_0572636187..636699 [+], 513292898294lipoprotein  TssJ
8EAM_0573636719..638062 [+], 1344292898295hypothetical protein  TssK
9EAM_0574638080..639321 [+], 1242292898296outer membrane protein  TssL
10EAM_0575639325..642957 [+], 3633292898297membrane protein  TssM
11EAM_0576642968..643684 [+], 717292898298hypothetical protein 
12EAM_0577643702..644721 [+], 1020292898299hypothetical protein  TssA
13EAM_0578644784..645320 [+], 537292898300hypothetical protein  TssB
14EAM_0579645324..646823 [+], 1500292898301hypothetical protein  TssC
15EAM_0580647101..647583 [+], 483292898302hypothetical protein  TssD
16EAM_0581647662..648141 [+], 480292898303hypothetical protein  Ssp2 (e)
17EAM_0582648126..648494 [+], 369292898304hypothetical protein 
18EAM_0583648632..649039 [+], 408292898305hypothetical protein 
19EAM_0584649165..649533 [+], 369292898306hypothetical protein 
20EAM_0585649652..651493 [+], 1842292898307hypothetical protein  Fha
21EAM_0586651490..652284 [+], 795292898308protein phosphatase 
22EAM_0587652303..653310 [+], 1008292898309hypothetical protein 
23EAM_0588653320..654141 [+], 822292898310hypothetical protein  TagJ
24EAM_0589654138..654704 [+], 567292898311hypothetical protein  TssE
25EAM_0590654723..656597 [+], 1875292898312hypothetical protein  TssF
26EAM_0591656594..657658 [+], 1065292898313hypothetical protein  TssG
27EAM_0592657755..660370 [+], 2616292898314ATPase with chaperone activity  TssH
28EAM_0593660400..661806 [+], 1407292898315protein kinase 
29EAM_0594661853..663817 [+], 1965292898316Rhs family protein  TssI
30EAM_0595663840..664907 [+], 1068292898317hypothetical protein  PAAR
31EAM_0596664931..665365 [+], 435292898318membrane protein 
32EAM_0597665389..666456 [+], 1068292898319hypothetical protein 
33EAM_0598666730..668664 [+], 1935292898320Rhs family protein  TssI
34EAM_0599668661..669110 [+], 450292898321hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , SMA2264

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EAM_0580647101..647583 [+], 483292898302hypothetical protein SMA2263
2EAM_0581647662..648141 [+], 480292898303hypothetical protein SMA2264

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Proteins        Genes
N/A
N/A