SecReT6
I. Summary
SecReT6 ID390 insolico
StrainYersinia pestis Z176003
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014029
Location586195..609809
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPZ3_0481 (djlA)582148..582981 [+], 834294502591Dna-J like membrane chaperone protein 
2YPZ3_0482 (rluA)583279..583899 [-], 621294502592ribosomal large subunit pseudouridine synthase A 
3YPZ3_0483585122..585865 [-], 744294502593hypothetical protein 
4YPZ3_0484586195..587208 [+], 1014294502594hypothetical protein  TssA
5YPZ3_0485587219..587779 [+], 561294502595hypothetical protein  TssB
6YPZ3_0486587788..589290 [+], 1503294502596hypothetical protein  TssC
7YPZ3_0487589453..589971 [+], 519294502597hypothetical protein  TssD
8YPZ3_0488590045..590488 [+], 444294502598hypothetical protein  TssE
9YPZ3_0489590521..592365 [+], 1845294502599hypothetical protein  TssF
10YPZ3_0490592427..593341 [+], 915294502600hypothetical protein  TssG
11YPZ3_0491593359..595947 [+], 2589294502601Clp ATPase  TssH
12YPZ3_0492596051..598399 [+], 2349294502602hypothetical protein  TssI
13YPZ3_0493598412..598984 [+], 573294502603hypothetical protein 
14YPZ3_0494599009..600631 [+], 1623294502604hypothetical protein 
15YPZ3_0495600657..601760 [+], 1104294502605hypothetical protein 
16YPZ3_0496601753..602370 [+], 618294502606hypothetical protein 
17YPZ3_0497602752..603225 [+], 474294502607lipoprotein  TssJ
18YPZ3_0498603345..604700 [+], 1356294502608hypothetical protein  TssK
19YPZ3_0499604697..606307 [+], 1611294502609hypothetical protein  TssL
20YPZ3_0500606369..609809 [+], 3441294502610hypothetical protein  TssM
21YPZ3_0501609831..610184 [+], 354294502611hypothetical protein 
22YPZ3_0502610440..613346 [-], 2907294502612ATP-dependent helicase HepA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563 , YPK_3558

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPZ3_0487589453..589971 [+], 519294502597hypothetical protein YPK_3563
2YPZ3_0492596051..598399 [+], 2349294502602hypothetical protein YPK_3558

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Proteins        Genes
N/A
N/A