SecReT6
I. Summary
SecReT6 ID393 insolico
StrainYersinia pestis Z176003
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014029
Location3319292..3355935
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPZ3_25693314459..3314926 [-], 468294504679hypothetical protein 
2YPZ3_2570 (lemA)3315542..3316084 [+], 543294504680hypothetical protein 
3YPZ3_25713316089..3318128 [+], 2040294504681hypothetical protein 
4YPZ3_25723318504..3318845 [+], 342294504682hypothetical protein 
5YPZ3_25733318920..3319267 [-], 348294504683hypothetical protein 
6YPZ3_25743319292..3319771 [-], 480294504684hypothetical protein  TssE
7YPZ3_25753319868..3320674 [-], 807294504685hypothetical protein  TagJ
8YPZ3_25763320694..3321542 [-], 849294504686hypothetical protein 
9YPZ3_25773321901..3324507 [-], 2607294504687Rhs element Vgr protein  TssI
10YPZ3_25783324834..3328661 [-], 3828294504688hypothetical protein  TssM
11YPZ3_25793328670..3329230 [-], 561294504689putative OmpA family protein  TagL
12YPZ3_25803329522..3330301 [-], 780294504690insertion sequence IS100, ATP-binding protein 
13YPZ3_25813330301..3331323 [-], 1023294504691transposase for insertion sequence IS100 
14YPZ3_25823331337..3331942 [-], 606294504692DotU family type IV / VI secretion system protein  TssL
15YPZ3_25833332002..3333351 [-], 1350294504693hypothetical protein  TssK
16YPZ3_25843333355..3333894 [-], 540294504694type VI secretion lipoprotein, family  TssJ
17YPZ3_25853334168..3334653 [-], 486294504695hypothetical protein  TssD
18YPZ3_25863334979..3336481 [-], 1503294504696hypothetical protein  TssC
19YPZ3_25873336505..3337029 [-], 525294504697hypothetical protein  TssB
20YPZ3_25883337134..3337742 [-], 609294504698fimbrial protein 
21YPZ3_25893337727..3338884 [-], 1158294504699outer membrane fimbrial usher porin 
22YPZ3_25903338942..3340150 [+], 1209294504700transposase 
23YPZ3_25913340172..3341551 [-], 1380294504701hypothetical protein 
24YPZ3_25923341850..3342611 [-], 762294504702pili chaperone protein 
25YPZ3_25933342768..3343313 [-], 546294504703frimbrial protein 
26YPZ3_2594 (clpB)3343514..3346069 [-], 2556294504704putative Clp ATPase  TssH
27YPZ3_25953347017..3348852 [+], 1836294504705hypothetical protein  TssF
28YPZ3_25963348852..3349877 [+], 1026294504706hypothetical protein  TssG
29YPZ3_25973349976..3351157 [+], 1182294504707hypothetical protein  TssA
30YPZ3_25983351272..3352195 [+], 924294504708hypothetical protein 
31YPZ3_25993352235..3353572 [+], 1338294504709hypothetical protein 
32YPZ3_26003353569..3354252 [+], 684294504710hypothetical protein 
33YPZ3_26013354253..3355935 [+], 1683294504711hypothetical protein  TagL
34YPZ3_26023356019..3356414 [+], 396294504712hypothetical protein 
35YPZ3_26033356772..3357374 [-], 603294504713putative luxR-family regulatory protein 
36YPZ3_26043358629..3359723 [-], 1095294504714membrane-bound lytic murein transglycosylase B 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPZ3_25853334168..3334653 [-], 486294504695hypothetical protein ROD_27741

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Proteins        Genes
N/A
N/A