SecReT6
I. Summary
SecReT6 ID394 insolico
StrainYersinia pestis Z176003
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014029
Location3953001..3980506
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101220001
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPZ3_3080 (nlpI)3948104..3948988 [-], 885294505189lipoprotein NlpI 
2YPZ3_3081 (pnp)3949113..3951230 [-], 2118294505190polyribonucleotide nucleotidyltransferase 
3YPZ3_30823951497..3952282 [-], 786294505191IS1661 transposase 
4YPZ3_30833952336..3952851 [-], 516294505192insertion element DNA-binding protein 
5YPZ3_30843953001..3953645 [+], 645294505193hypothetical protein  TssF
6YPZ3_30853953609..3954697 [+], 1089294505194hypothetical protein  TssG
7YPZ3_30863954823..3956139 [+], 1317294505195hypothetical protein  Fha
8YPZ3_30873956139..3956684 [+], 546294505196putative lipoprotein  TssJ
9YPZ3_30883956687..3958033 [+], 1347294505197hypothetical protein  TssK
10YPZ3_30893958033..3958800 [+], 768294505198hypothetical protein  TssL
11YPZ3_3090 (clpB2)3958811..3961414 [+], 2604294505199Clp ATPase  TssH
12YPZ3_30913961411..3962208 [+], 798294505200hypothetical protein 
13YPZ3_30923962205..3962891 [+], 687294505201hypothetical protein 
14YPZ3_30933962897..3964285 [+], 1389294505202hypothetical protein  TssA
15YPZ3_30943964317..3967850 [+], 3534294505203hypothetical protein  TssM
16YPZ3_30953967975..3968757 [+], 783294505204hypothetical protein  TssA
17YPZ3_30963968754..3969287 [+], 534294505205hypothetical protein 
18YPZ3_30973969309..3971711 [+], 2403294505206putative Rhs accessory genetic element  TssI
19YPZ3_30983971717..3972175 [+], 459294505207hypothetical protein 
20YPZ3_30993972168..3975032 [+], 2865294505208hypothetical protein  PAAR
21YPZ3_31003975060..3976430 [+], 1371294505209hypothetical protein 
22YPZ3_31013976432..3976917 [+], 486294505210hypothetical protein 
23YPZ3_31023977540..3977947 [-], 408294505211putative transcriptional regulatory protein 
24YPZ3_3103 (vgrG6)3978308..3980506 [+], 2199294505212putative Rhs accessory genetic element  TssI
25YPZ3_31043980509..3980931 [+], 423294505213hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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